Information for 11-AGCCGCSCTGCCA (Motif 26)

C G T A A T C G A T G C T G A C C T A G A T G C A T C G A T G C G C A T A T C G A G T C A T G C T C G A
Reverse Opposite:
A G C T A T C G T C A G A T G C C G T A A T C G T A G C T A C G A G T C A C T G A T C G A T G C C G A T
p-value:1e-8
log p-value:-2.029e+01
Information Content per bp:1.655
Number of Target Sequences with motif34.0
Percentage of Target Sequences with motif5.12%
Number of Background Sequences with motif695.0
Percentage of Background Sequences with motif1.51%
Average Position of motif in Targets44.2 +/- 25.4bp
Average Position of motif in Background49.7 +/- 30.4bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL003.1_GC-box/Jaspar

Match Rank:1
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:AGCCGCSCTGCCA---
--NAGCCCCGCCCCCN
 C G T A A T C G A T G C T G A C C T A G A T G C A T C G A T G C G C A T A T C G A G T C A T G C T C G A A C G T A C G T A C G T
A C G T A C G T G T A C T C G A T C A G G T A C G A T C T G A C G A T C C A T G A G T C A G T C A G T C G T A C G A T C G C A T

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:AGCCGCSCTGCCA-
TGGCAGNCTGCCAG
 C G T A A T C G A T G C T G A C C T A G A T G C A T C G A T G C G C A T A T C G A G T C A T G C T C G A A C G T
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G

THAP1/MA0597.1/Jaspar

Match Rank:3
Score:0.58
Offset:7
Orientation:forward strand
Alignment:AGCCGCSCTGCCA---
-------CTGCCCGCA
 C G T A A T C G A T G C T G A C C T A G A T G C A T C G A T G C G C A T A T C G A G T C A T G C T C G A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A

Sp1(Zf)/Promoter/Homer

Match Rank:4
Score:0.58
Offset:3
Orientation:forward strand
Alignment:AGCCGCSCTGCCA--
---GGCCCCGCCCCC
 C G T A A T C G A T G C T G A C C T A G A T G C A T C G A T G C G C A T A T C G A G T C A T G C T C G A A C G T A C G T
A C G T A C G T A C G T T A C G C T A G A T G C G A T C G T A C A G T C C T A G A G T C A G T C A G T C G T A C A G T C

PB0164.1_Smad3_2/Jaspar

Match Rank:5
Score:0.58
Offset:1
Orientation:forward strand
Alignment:AGCCGCSCTGCCA-----
-TACGCCCCGCCACTCTG
 C G T A A T C G A T G C T G A C C T A G A T G C A T C G A T G C G C A T A T C G A G T C A T G C T C G A A C G T A C G T A C G T A C G T A C G T
A C G T C A G T G T C A G T A C A C T G G A T C A G T C T A G C A T G C T A C G A G T C G T A C G T C A G T A C G A C T A G T C G A C T A C T G

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:6
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-AGCCGCSCTGCCA
TTGGCATGGTGCCA
 A C G T C G T A A T C G A T G C T G A C C T A G A T G C A T C G A T G C G C A T A T C G A G T C A T G C T C G A
G A C T A C G T A C T G A C T G A G T C C G T A G A C T A T C G A T C G C A G T A C T G A G T C A G T C C G T A

Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer

Match Rank:7
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:AGCCGCSCTGCCA---
----GCTCCGCCCMCY
 C G T A A T C G A T G C T G A C C T A G A T G C A T C G A T G C G C A T A T C G A G T C A T G C T C G A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T A G A G T C G A C T G T A C A T G C C T A G A G T C A G T C A G T C G T C A A G T C G A C T

NFIX/MA0671.1/Jaspar

Match Rank:8
Score:0.56
Offset:6
Orientation:forward strand
Alignment:AGCCGCSCTGCCA--
------CGTGCCAAG
 C G T A A T C G A T G C T G A C C T A G A T G C A T C G A T G C G C A T A T C G A G T C A T G C T C G A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

NFIC/MA0161.1/Jaspar

Match Rank:9
Score:0.55
Offset:8
Orientation:reverse strand
Alignment:AGCCGCSCTGCCA-
--------TGCCAA
 C G T A A T C G A T G C T G A C C T A G A T G C A T C G A T G C G C A T A T C G A G T C A T G C T C G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--AGCCGCSCTGCCA-
CTTGGCANNNTGCCAA
 A C G T A C G T C G T A A T C G A T G C T G A C C T A G A T G C A T C G A T G C G C A T A T C G A G T C A T G C T C G A A C G T
A G T C G A C T C A G T A C T G C T A G T G A C G C T A A T G C G C A T A T C G C G A T A C T G G A T C G T A C G T C A C T G A