Information for 4-AAAGCTGCCAGTC (Motif 13)

C G T A C G T A C G T A A T C G A G T C C G A T A C T G G T A C A G T C C G T A A C T G A G C T A G T C
Reverse Opposite:
A C T G C T G A A G T C C G A T A C T G C A T G A G T C C G T A A C T G A T G C C G A T A C G T A C G T
p-value:1e-10
log p-value:-2.467e+01
Information Content per bp:1.863
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.05%
Number of Background Sequences with motif7.8
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets48.9 +/- 26.4bp
Average Position of motif in Background38.0 +/- 31.7bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:1
Score:0.63
Offset:3
Orientation:forward strand
Alignment:AAAGCTGCCAGTC--
---SCTGTCAVTCAV
 C G T A C G T A C G T A A T C G A G T C C G A T A C T G G T A C A G T C C G T A A C T G A G C T A G T C A C G T A C G T
A C G T A C G T A C G T T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.63
Offset:3
Orientation:forward strand
Alignment:AAAGCTGCCAGTC--
---NCTGTCAATCAN
 C G T A C G T A C G T A A T C G A G T C C G A T A C T G G T A C A G T C C G T A A C T G A G C T A G T C A C G T A C G T
A C G T A C G T A C G T T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:3
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:AAAGCTGCCAGTC
---VBTGWCAGCB
 C G T A C G T A C G T A A T C G A G T C C G A T A C T G G T A C A G T C C G T A A C T G A G C T A G T C
A C G T A C G T A C G T T C A G A T G C A C G T A C T G C G T A A G T C C G T A A T C G A T G C A G T C

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:4
Score:0.60
Offset:2
Orientation:forward strand
Alignment:AAAGCTGCCAGTC-
--GSCTGTCACTCA
 C G T A C G T A C G T A A T C G A G T C C G A T A C T G G T A C A G T C C G T A A C T G A G C T A G T C A C G T
A C G T A C G T C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.60
Offset:2
Orientation:forward strand
Alignment:AAAGCTGCCAGTC-
--AGGTGHCAGACA
 C G T A C G T A C G T A A T C G A G T C C G A T A C T G G T A C A G T C C G T A A C T G A G C T A G T C A C G T
A C G T A C G T C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:6
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:AAAGCTGCCAGTC--
--AGGTGNCAGACAG
 C G T A C G T A C G T A A T C G A G T C C G A T A C T G G T A C A G T C C G T A A C T G A G C T A G T C A C G T A C G T
A C G T A C G T C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

Mafb/MA0117.2/Jaspar

Match Rank:7
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--AAAGCTGCCAGTC
AAAATGCTGACT---
 A C G T A C G T C G T A C G T A C G T A A T C G A G T C C G A T A C T G G T A C A G T C C G T A A C T G A G C T A G T C
C G T A C G T A G C T A C G T A G A C T A T C G G T A C G A C T C A T G C T G A A T G C C A G T A C G T A C G T A C G T

PB0195.1_Zbtb3_2/Jaspar

Match Rank:8
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:AAAGCTGCCAGTC----
-NNNNTGCCAGTGATTG
 C G T A C G T A C G T A A T C G A G T C C G A T A C T G G T A C A G T C C G T A A C T G A G C T A G T C A C G T A C G T A C G T A C G T
A C G T G C T A G C A T C G A T G A T C G A C T T C A G T G A C T A G C C G T A A C T G A G C T C A T G C G T A A G C T C G A T T C A G

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:9
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:AAAGCTGCCAGTC
--ARNTGACA---
 C G T A C G T A C G T A A T C G A G T C C G A T A C T G G T A C A G T C C G T A A C T G A G C T A G T C
A C G T A C G T T G C A C T A G G A T C A C G T C T A G C G T A G T A C T C G A A C G T A C G T A C G T

Myb/MA0100.2/Jaspar

Match Rank:10
Score:0.56
Offset:0
Orientation:forward strand
Alignment:AAAGCTGCCAGTC
CCAACTGCCA---
 C G T A C G T A C G T A A T C G A G T C C G A T A C T G G T A C A G T C C G T A A C T G A G C T A G T C
A G T C G A T C C G T A C T G A A G T C C G A T A C T G G A T C G T A C G C T A A C G T A C G T A C G T