Information for 2-CTCCGGCTTMGGCTGC (Motif 5)

G T A C A C G T A G T C A G T C C T A G A C T G T A G C C G A T A C G T G T C A A C T G A T C G A G T C A G C T A C T G A G T C
Reverse Opposite:
A C T G A G T C T C G A A C T G A T G C G T A C A C G T C G T A C G T A A T C G A G T C G A T C C T A G C T A G C G T A A C T G
p-value:1e-19
log p-value:-4.395e+01
Information Content per bp:1.799
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.01%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets46.2 +/- 24.1bp
Average Position of motif in Background69.6 +/- 11.9bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SPDEF/MA0686.1/Jaspar

Match Rank:1
Score:0.49
Offset:-3
Orientation:reverse strand
Alignment:---CTCCGGCTTMGGCTGC
TACATCCGGGT--------
 A C G T A C G T A C G T G T A C A C G T A G T C A G T C C T A G A C T G T A G C C G A T A C G T G T C A A C T G A T C G A G T C A G C T A C T G A G T C
G A C T C T G A A G T C C G T A G A C T G T A C A G T C A C T G A T C G A C T G G C A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:2
Score:0.49
Offset:4
Orientation:reverse strand
Alignment:CTCCGGCTTMGGCTGC
----GGATTAGC----
 G T A C A C G T A G T C A G T C C T A G A C T G T A G C C G A T A C G T G T C A A C T G A T C G A G T C A G C T A C T G A G T C
A C G T A C G T A C G T A C G T T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:3
Score:0.48
Offset:8
Orientation:forward strand
Alignment:CTCCGGCTTMGGCTGC
--------TWGTCTGV
 G T A C A C G T A G T C A G T C C T A G A C T G T A G C C G A T A C G T G T C A A C T G A T C G A G T C A G C T A C T G A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G

PB0077.1_Spdef_1/Jaspar

Match Rank:4
Score:0.48
Offset:-4
Orientation:forward strand
Alignment:----CTCCGGCTTMGGCTGC
GTACATCCGGATTTTT----
 A C G T A C G T A C G T A C G T G T A C A C G T A G T C A G T C C T A G A C T G T A G C C G A T A C G T G T C A A C T G A T C G A G T C A G C T A C T G A G T C
T C A G G A C T C T G A A G T C C G T A C G A T T A G C G T A C A C T G A T C G C T G A G C A T G C A T G A C T A G C T A G C T A C G T A C G T A C G T A C G T

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:5
Score:0.47
Offset:-2
Orientation:forward strand
Alignment:--CTCCGGCTTMGGCTGC
ACATCCTGNT--------
 A C G T A C G T G T A C A C G T A G T C A G T C C T A G A C T G T A G C C G A T A C G T G T C A A C T G A T C G A G T C A G C T A C T G A G T C
C T G A A T G C C G T A A C G T A G T C A G T C A C G T A C T G A T C G G C A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0185.1_Tcf1_2/Jaspar

Match Rank:6
Score:0.47
Offset:-2
Orientation:forward strand
Alignment:--CTCCGGCTTMGGCTGC
TTGCCCGGATTAGG----
 A C G T A C G T G T A C A C G T A G T C A G T C C T A G A C T G T A G C C G A T A C G T G T C A A C T G A T C G A G T C A G C T A C T G A G T C
C G A T A C G T T C A G G A T C T A G C A G T C T A C G A C T G C T G A C A G T A C G T C G T A C A T G C T A G A C G T A C G T A C G T A C G T

ELF1/MA0473.2/Jaspar

Match Rank:7
Score:0.47
Offset:-3
Orientation:reverse strand
Alignment:---CTCCGGCTTMGGCTGC
NACTTCCGGGTT-------
 A C G T A C G T A C G T G T A C A C G T A G T C A G T C C T A G A C T G T A G C C G A T A C G T G T C A A C T G A T C G A G T C A G C T A C T G A G T C
A G T C C T G A G A T C C G A T A G C T A G T C A G T C A C T G A T C G C A T G C G A T G C A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:8
Score:0.46
Offset:-1
Orientation:forward strand
Alignment:-CTCCGGCTTMGGCTGC
GGTCTGGCAT-------
 A C G T G T A C A C G T A G T C A G T C C T A G A C T G T A G C C G A T A C G T G T C A A C T G A T C G A G T C A G C T A C T G A G T C
A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.46
Offset:0
Orientation:reverse strand
Alignment:CTCCGGCTTMGGCTGC----
AACCGGTTNNAACCGGTTTN
 G T A C A C G T A G T C A G T C C T A G A C T G T A G C C G A T A C G T G T C A A C T G A T C G A G T C A G C T A C T G A G T C A C G T A C G T A C G T A C G T
C T G A C T G A A T G C G A T C C T A G A T C G G A C T G A C T A G C T C T A G C T G A C T G A A T G C G A T C C T A G A T C G G A C T G A C T A G C T A C T G

ELF4/MA0641.1/Jaspar

Match Rank:10
Score:0.45
Offset:-3
Orientation:reverse strand
Alignment:---CTCCGGCTTMGGCTGC
CACTTCCGGGTT-------
 A C G T A C G T A C G T G T A C A C G T A G T C A G T C C T A G A C T G T A G C C G A T A C G T G T C A A C T G A T C G A G T C A G C T A C T G A G T C
G A T C T C G A A G T C C A G T G A C T G T A C A G T C A C T G A T C G C A T G C G A T G C A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T