Information for 3-CCCACCCGCAGGC (Motif 4)

A G T C A T G C G T A C C G T A T A G C G A T C G A T C T A C G A T G C T C G A A C T G T C A G A T G C
Reverse Opposite:
A T C G A G T C G T A C A G C T A T C G A T G C C T A G C T A G A T C G A C G T A C T G T A C G C T A G
p-value:1e-12
log p-value:-2.835e+01
Information Content per bp:1.732
Number of Target Sequences with motif34.0
Percentage of Target Sequences with motif4.00%
Number of Background Sequences with motif330.9
Percentage of Background Sequences with motif0.86%
Average Position of motif in Targets57.1 +/- 23.4bp
Average Position of motif in Background49.8 +/- 30.9bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TFAP2A(var.2)/MA0810.1/Jaspar

Match Rank:1
Score:0.64
Offset:2
Orientation:forward strand
Alignment:CCCACCCGCAGGC-
--TGCCCCCGGGCA
 A G T C A T G C G T A C C G T A T A G C G A T C G A T C T A C G A T G C T C G A A C T G T C A G A T G C A C G T
A C G T A C G T G A C T T A C G T A G C A G T C A G T C A G T C T G A C T C A G T C A G A T C G A T G C C T G A

TFAP2B(var.2)/MA0812.1/Jaspar

Match Rank:2
Score:0.62
Offset:3
Orientation:forward strand
Alignment:CCCACCCGCAGGC-
---AGCCTCAGGCA
 A G T C A T G C G T A C C G T A T A G C G A T C G A T C T A C G A T G C T C G A A C T G T C A G A T G C A C G T
A C G T A C G T A C G T G T C A T A C G A T G C A G T C A G C T T A G C T G C A T C A G T A C G T A G C C G T A

TFAP2A/MA0003.3/Jaspar

Match Rank:3
Score:0.61
Offset:3
Orientation:forward strand
Alignment:CCCACCCGCAGGC-
---CGCCTCAGGCA
 A G T C A T G C G T A C C G T A T A G C G A T C G A T C T A C G A T G C T C G A A C T G T C A G A T G C A C G T
A C G T A C G T A C G T G T A C T A C G A T G C A G T C A G C T T A G C T G C A T C A G A T C G T A G C C G T A

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:4
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CCCACCCGCAGGC
SNGCACCTGCHS--
 A C G T A G T C A T G C G T A C C G T A T A G C G A T C G A T C T A C G A T G C T C G A A C T G T C A G A T G C
T A C G C T A G T A C G A G T C C G T A A G T C A G T C A C G T A C T G A G T C G A T C T A G C A C G T A C G T

TFAP2B/MA0811.1/Jaspar

Match Rank:5
Score:0.60
Offset:2
Orientation:forward strand
Alignment:CCCACCCGCAGGC-
--TGCCCCAGGGCA
 A G T C A T G C G T A C C G T A T A G C G A T C G A T C T A C G A T G C T C G A A C T G T C A G A T G C A C G T
A C G T A C G T G A C T T A C G A T G C G A T C A G T C A G T C T C G A T C A G T C A G T A C G A T G C C T G A

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CCCACCCGCAGGC-------
GCCASCAGGGGGCGCYVNNG
 A G T C A T G C G T A C C G T A T A G C G A T C G A T C T A C G A T G C T C G A A C T G T C A G A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:7
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--CCCACCCGCAGGC-----
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A G T C A T G C G T A C C G T A T A G C G A T C G A T C T A C G A T G C T C G A A C T G T C A G A T G C A C G T A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

GCM1/MA0646.1/Jaspar

Match Rank:8
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:CCCACCCGCAGGC
-GTACCCGCATN-
 A G T C A T G C G T A C C G T A T A G C G A T C G A T C T A C G A T G C T C G A A C T G T C A G A T G C
A C G T T A C G A G C T T C G A T A G C T G A C G T A C C A T G A G T C C G T A A G C T T C A G A C G T

TFAP2C(var.2)/MA0814.1/Jaspar

Match Rank:9
Score:0.59
Offset:3
Orientation:forward strand
Alignment:CCCACCCGCAGGC-
---AGCCTCAGGCA
 A G T C A T G C G T A C C G T A T A G C G A T C G A T C T A C G A T G C T C G A A C T G T C A G A T G C A C G T
A C G T A C G T A C G T G T C A T A C G A T G C A G T C A G C T T A G C T C G A T C A G A T C G T A G C C G T A

TFAP2C/MA0524.2/Jaspar

Match Rank:10
Score:0.58
Offset:2
Orientation:forward strand
Alignment:CCCACCCGCAGGC-
--TGCCCCAGGGCA
 A G T C A T G C G T A C C G T A T A G C G A T C G A T C T A C G A T G C T C G A A C T G T C A G A T G C A C G T
A C G T A C G T G A C T T A C G T A G C G A T C A G T C A G T C T C G A T C A G C T A G T A C G A T G C C T G A