Information for 15-CATCCATCCAGGG (Motif 20)

A G T C C G T A C A G T A G T C A T G C G T C A C A G T A G T C A G T C C G T A C T A G A C T G A C T G
Reverse Opposite:
A G T C A G T C A G T C C G A T A C T G A C T G G T C A A C G T A T C G A C T G G C T A C G A T A C T G
p-value:1e-8
log p-value:-1.876e+01
Information Content per bp:1.820
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.94%
Number of Background Sequences with motif17.8
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets37.3 +/- 24.4bp
Average Position of motif in Background37.7 +/- 30.4bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:1
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CATCCATCCAGGG-
SCAGYCADGCATGAC
 A C G T A G T C C G T A C A G T A G T C A T G C G T C A C A G T A G T C A G T C C G T A C T A G A C T G A C T G A C G T
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---CATCCATCCAGGG
TGGCAGNCTGCCAG--
 A C G T A C G T A C G T A G T C C G T A C A G T A G T C A T G C G T C A C A G T A G T C A G T C C G T A C T A G A C T G A C T G
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G A C G T A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:3
Score:0.55
Offset:5
Orientation:forward strand
Alignment:CATCCATCCAGGG--
-----WDNCTGGGCA
 A G T C C G T A C A G T A G T C A T G C G T C A C A G T A G T C A G T C C G T A C T A G A C T G A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C A T C T A G G T A C A G T C C G A T A C T G C T A G C T A G G T A C G C T A

PB0102.1_Zic2_1/Jaspar

Match Rank:4
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:CATCCATCCAGGG----
--ACCCCCCCGGGGGGN
 A G T C C G T A C A G T A G T C A T G C G T C A C A G T A G T C A G T C C G T A C T A G A C T G A C T G A C G T A C G T A C G T A C G T
A C G T A C G T T G C A T A G C G T A C G T A C G T A C G T A C A T G C T G A C A T C G A T C G A C T G C A T G C A T G C A T G T A C G

PB0103.1_Zic3_1/Jaspar

Match Rank:5
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:CATCCATCCAGGG----
--NCCCCCCCGGGGGGN
 A G T C C G T A C A G T A G T C A T G C G T C A C A G T A G T C A G T C C G T A C T A G A C T G A C T G A C G T A C G T A C G T A C G T
A C G T A C G T T C G A T A G C G T A C G T A C G T A C G T A C A T G C T G A C A T C G T A C G A C T G C A T G C A T G C A T G T A C G

PB0101.1_Zic1_1/Jaspar

Match Rank:6
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:CATCCATCCAGGG----
---CCCCCCCGGGGGNN
 A G T C C G T A C A G T A G T C A T G C G T C A C A G T A G T C A G T C C G T A C T A G A C T G A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T A G C T G A C G A T C G T A C G T A C A T G C T A G C A T C G T A C G A C T G A C T G C A T G C A G T T A C G

Znf423/MA0116.1/Jaspar

Match Rank:7
Score:0.54
Offset:2
Orientation:forward strand
Alignment:CATCCATCCAGGG----
--GGCACCCAGGGGTGC
 A G T C C G T A C A G T A G T C A T G C G T C A C A G T A G T C A G T C C G T A C T A G A C T G A C T G A C G T A C G T A C G T A C G T
A C G T A C G T T C A G A T C G G T A C G T C A A G T C A G T C G A T C C G T A C T A G A C T G A C T G A C T G A C G T A C T G G T A C

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:8
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--CATCCATCCAGGG
GYCATCMATCAT---
 A C G T A C G T A G T C C G T A C A G T A G T C A T G C G T C A C A G T A G T C A G T C C G T A C T A G A C T G A C T G
T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T A C G T A C G T A C G T

E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer

Match Rank:9
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:CATCCATCCAGGG
-TTCCCGCCWG--
 A G T C C G T A C A G T A G T C A T G C G T C A C A G T A G T C A G T C C G T A C T A G A C T G A C T G
A C G T A G C T A C G T A T G C A T G C A G T C A C T G A G T C A T G C G C T A A T C G A C G T A C G T

E2F6/MA0471.1/Jaspar

Match Rank:10
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-CATCCATCCAGGG
NCTTCCCGCCC---
 A C G T A G T C C G T A C A G T A G T C A T G C G T C A C A G T A G T C A G T C C G T A C T A G A C T G A C T G
A G T C A G T C A G C T A C G T A T G C A G T C A G T C C A T G A G T C A G T C G A T C A C G T A C G T A C G T