Information for 5-CAAATTAATT (Motif 15)

A G T C C G T A C T G A C G T A A C G T G A C T G T C A T G C A A C G T G A C T
Reverse Opposite:
C G T A C G T A A C G T A C G T C G T A T G C A A C G T A G C T A C G T C T A G
p-value:1e-8
log p-value:-1.987e+01
Information Content per bp:1.754
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.71%
Number of Background Sequences with motif5.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets44.5 +/- 34.0bp
Average Position of motif in Background51.9 +/- 21.3bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0071.1_Hoxc6/Jaspar

Match Rank:1
Score:0.77
Offset:0
Orientation:forward strand
Alignment:CAAATTAATT-------
CAAATTAATTAATAAAA
 A G T C C G T A C T G A C G T A A C G T G A C T G T C A T G C A A C G T G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A G T C C T G A G C T A T C G A C A G T G A C T G C T A C G T A C G A T C G A T C T G A G T C A A C G T C G T A T C G A T G C A C G T A

Lhx3/MA0135.1/Jaspar

Match Rank:2
Score:0.77
Offset:1
Orientation:forward strand
Alignment:CAAATTAATT----
-AAATTAATTAATC
 A G T C C G T A C T G A C G T A A C G T G A C T G T C A T G C A A C G T G A C T A C G T A C G T A C G T A C G T
A C G T C G T A T C G A C G T A A C G T A C G T C G T A C G T A G A C T A G C T G C T A C G T A G A C T A G T C

Arid3b/MA0601.1/Jaspar

Match Rank:3
Score:0.75
Offset:1
Orientation:forward strand
Alignment:CAAATTAATT--
-ATATTAATTAA
 A G T C C G T A C T G A C G T A A C G T G A C T G T C A T G C A A C G T G A C T A C G T A C G T
A C G T C G T A C G A T G C T A C G A T A C G T C G T A C G T A C G A T G C A T C G T A C G T A

PH0118.1_Nkx6-1_1/Jaspar

Match Rank:4
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-CAAATTAATT------
GAAAATTAATTACTTCG
 A C G T A G T C C G T A C T G A C G T A A C G T G A C T G T C A T G C A A C G T G A C T A C G T A C G T A C G T A C G T A C G T A C G T
C T A G T G C A G C T A C G T A C G T A C G A T A G C T C G T A C G T A C G A T A C G T C T G A G T A C G A C T A G C T A G T C A T C G

MF0010.1_Homeobox_class/Jaspar

Match Rank:5
Score:0.73
Offset:3
Orientation:forward strand
Alignment:CAAATTAATT
---AATAATT
 A G T C C G T A C T G A C G T A A C G T G A C T G T C A T G C A A C G T G A C T
A C G T A C G T A C G T G C T A C G T A G C A T C T G A C T G A C G A T C G A T

PH0007.1_Barx1/Jaspar

Match Rank:6
Score:0.72
Offset:1
Orientation:forward strand
Alignment:CAAATTAATT-------
-AAAGTAATTAGTGAAT
 A G T C C G T A C T G A C G T A A C G T G A C T G T C A T G C A A C G T G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G T C A G T C A T C G A T A C G G A C T T G C A G T C A A C G T A C G T C T G A A T C G A G C T C A T G G C T A C G T A G C A T

PH0054.1_Hoxa7_1/Jaspar

Match Rank:7
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-CAAATTAATT------
GNNNATTAATTAANNCG
 A C G T A G T C C G T A C T G A C G T A A C G T G A C T G T C A T G C A A C G T G A C T A C G T A C G T A C G T A C G T A C G T A C G T
C A T G T G A C G C A T G C A T C T G A C A G T G A C T G C T A C G T A G C A T C G A T C T G A G T C A G A T C C A G T A G T C A T C G

PH0069.1_Hoxc4/Jaspar

Match Rank:8
Score:0.71
Offset:0
Orientation:forward strand
Alignment:CAAATTAATT-------
CGAATTAATTAACAATA
 A G T C C G T A C T G A C G T A A C G T G A C T G T C A T G C A A C G T G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T G A C T C A G G T C A C T G A G C A T G A C T G T C A C G T A C G A T A C G T C T G A C G T A A G T C G C T A T G C A G C A T G T C A

PH0106.1_Msx1/Jaspar

Match Rank:9
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:CAAATTAATT-------
-NNATTAATTAGTNGNN
 A G T C C G T A C T G A C G T A A C G T G A C T G T C A T G C A A C G T G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C A T G C G T A T G C A G A C T G A C T C G T A C G T A A C G T A C G T C T G A C T A G G A C T C G A T C A T G A G T C T G C A

PH0120.1_Nkx6-3/Jaspar

Match Rank:10
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-CAAATTAATT------
GAAAATTAATTACTTTG
 A C G T A G T C C G T A C T G A C G T A A C G T G A C T G T C A T G C A A C G T G A C T A C G T A C G T A C G T A C G T A C G T A C G T
C T A G T G C A G C A T C G T A G C T A C G A T G A C T C G T A C G T A C G A T A C G T C T G A T G A C A G C T A C G T A G C T A C T G