Information for 5-CTGGCMCGGA (Motif 27)

A T G C A G C T A C T G C A T G A T G C T G A C T A G C A C T G A T C G T G C A
Reverse Opposite:
A C G T A T G C G T A C A T C G A C T G A T C G G T A C A G T C C T G A A T C G
p-value:1e-6
log p-value:-1.383e+01
Information Content per bp:1.773
Number of Target Sequences with motif35.0
Percentage of Target Sequences with motif4.32%
Number of Background Sequences with motif839.7
Percentage of Background Sequences with motif1.71%
Average Position of motif in Targets52.1 +/- 26.4bp
Average Position of motif in Background51.7 +/- 27.4bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIX/MA0671.1/Jaspar

Match Rank:1
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-CTGGCMCGGA
NTTGGCANN--
 A C G T A T G C A G C T A C T G C A T G A T G C T G A C T A G C A C T G A T C G T G C A
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:2
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CTGGCMCGGA
TTGGCA----
 A T G C A G C T A C T G C A T G A T G C T G A C T A G C A C T G A T C G T G C A
G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T

POL006.1_BREu/Jaspar

Match Rank:3
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:CTGGCMCGGA
--GGCGCGCT
 A T G C A G C T A C T G C A T G A T G C T G A C T A G C A C T G A T C G T G C A
A C G T A C G T C T A G T A C G A G T C A C T G A G T C A T C G A T G C A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:4
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---CTGGCMCGGA
GGTCTGGCAT---
 A C G T A C G T A C G T A T G C A G C T A C T G C A T G A T G C T G A C T A G C A C T G A T C G T G C A
A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T A C G T A C G T

PB0153.1_Nr2f2_2/Jaspar

Match Rank:5
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---CTGGCMCGGA---
NNNNTGACCCGGCGCG
 A C G T A C G T A C G T A T G C A G C T A C T G C A T G A T G C T G A C T A G C A C T G A T C G T G C A A C G T A C G T A C G T
C G A T T C G A T A G C A T C G A G C T T C A G G T C A G T A C G T A C A G T C T A C G T C A G G T A C A C T G G T A C A C T G

PB0164.1_Smad3_2/Jaspar

Match Rank:6
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----CTGGCMCGGA---
NAGANTGGCGGGGNGNA
 A C G T A C G T A C G T A C G T A T G C A G C T A C T G C A T G A T G C T G A C T A G C A C T G A T C G T G C A A C G T A C G T A C G T
T G A C C T G A T C A G C T G A C A T G A C G T C A T G T C A G A T G C T A C G A T C G T C A G C T A G T A G C C A T G C A G T G T C A

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CTGGCMCGGA
CTTGGCAA---
 A C G T A T G C A G C T A C T G C A T G A T G C T G A C T A G C A C T G A T C G T G C A
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:8
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--CTGGCMCGGA
GGTTGGCAT---
 A C G T A C G T A T G C A G C T A C T G C A T G A T G C T G A C T A G C A C T G A T C G T G C A
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T A C G T

PB0113.1_E2F3_2/Jaspar

Match Rank:9
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----CTGGCMCGGA---
NNNNTTGGCGCCGANNN
 A C G T A C G T A C G T A C G T A T G C A G C T A C T G C A T G A T G C T G A C T A G C A C T G A T C G T G C A A C G T A C G T A C G T
T A C G T A G C A C G T G A C T A C G T G C A T C T A G A T C G G T A C A C T G A T G C A G T C C T A G G C T A C T A G A T G C C A G T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:10
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CTGGCMCGGA-
-TBGCACGCAA
 A T G C A G C T A C T G C A T G A T G C T G A C T A G C A C T G A T C G T G C A A C G T
A C G T G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A