Information for 5-TGCTGTATGGAGT (Motif 13)

A C G T A C T G A G T C A C G T C T A G A C G T C G T A A C G T A C T G A C T G G T C A A T C G A C G T
Reverse Opposite:
C G T A A T G C A C G T A G T C A G T C C G T A A C G T G T C A A G T C C G T A A C T G A G T C C G T A
p-value:1e-8
log p-value:-1.962e+01
Information Content per bp:1.933
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.49%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets29.5 +/- 21.8bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0060.1_Smad3_1/Jaspar

Match Rank:1
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--TGCTGTATGGAGT--
NNTNNTGTCTGGNNTNG
 A C G T A C G T A C G T A C T G A G T C A C G T C T A G A C G T C G T A A C G T A C T G A C T G G T C A A T C G A C G T A C G T A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

Hoxa9/MA0594.1/Jaspar

Match Rank:2
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:TGCTGTATGGAGT
TGATTTATGGC--
 A C G T A C T G A G T C A C G T C T A G A C G T C G T A A C G T A C T G A C T G G T C A A T C G A C G T
C G A T C T A G G C T A A C G T C G A T A C G T C G T A A G C T C A T G C T A G A T G C A C G T A C G T

PH0158.1_Rhox11_2/Jaspar

Match Rank:3
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----TGCTGTATGGAGT
AGGACGCTGTAAAGGGA
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T C T A G A C G T C G T A A C G T A C T G A C T G G T C A A T C G A C G T
C G T A T C A G C A T G G T C A G A T C C T A G T A G C C A G T C T A G G A C T G C T A C G T A G C T A C T A G T A C G T C A G G C T A

Rhox11/MA0629.1/Jaspar

Match Rank:4
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----TGCTGTATGGAGT
AAGACGCTGTAAAGCGA
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T C T A G A C G T C G T A A C G T A C T G A C T G G T C A A T C G A C G T
C G T A T G C A C A T G T G C A G A T C C T A G T A G C C A G T C T A G G A C T C G T A G C T A G C T A C T A G T A G C T C A G G C T A

PH0157.1_Rhox11_1/Jaspar

Match Rank:5
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----TGCTGTATGGAGT
AAGACGCTGTAAAGCGA
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T C T A G A C G T C G T A A C G T A C T G A C T G G T C A A T C G A C G T
C G T A T G C A C A T G T G C A G A T C C T A G T A G C C A G T C T A G G A C T C G T A G C T A G C T A C T A G T A G C T C A G G C T A

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:6
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:TGCTGTATGGAGT
TGATTTATGGCC-
 A C G T A C T G A G T C A C G T C T A G A C G T C G T A A C G T A C T G A C T G G T C A A T C G A C G T
C G A T C T A G C G T A C G A T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.56
Offset:2
Orientation:forward strand
Alignment:TGCTGTATGGAGT
--CTGTCTGG---
 A C G T A C T G A G T C A C G T C T A G A C G T C G T A A C G T A C T G A C T G G T C A A T C G A C G T
A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:8
Score:0.54
Offset:-5
Orientation:reverse strand
Alignment:-----TGCTGTATGGAGT
TNTCCTGCTGTGNNG---
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T C T A G A C G T C G T A A C G T A C T G A C T G G T C A A T C G A C G T
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G A C G T A C G T A C G T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:9
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-TGCTGTATGGAGT
ATGATKGATGRC--
 A C G T A C G T A C T G A G T C A C G T C T A G A C G T C G T A A C G T A C T G A C T G G T C A A T C G A C G T
C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:10
Score:0.54
Offset:1
Orientation:forward strand
Alignment:TGCTGTATGGAGT
-GCTGTG------
 A C G T A C T G A G T C A C G T C T A G A C G T C G T A A C G T A C T G A C T G G T C A A T C G A C G T
A C G T T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T A C G T A C G T A C G T