Information for 9-GGGGMHGTTCCCGCAK (Motif 12)

A T C G A C T G A T C G A C T G T G A C G A T C A C T G A C G T G A C T A G T C A T G C G T A C A T C G A T G C C G T A A C G T
Reverse Opposite:
G T C A A C G T A T C G A T G C A C T G A T C G A C T G C G T A G T C A G T A C C A T G A C T G A G T C A T G C A G T C A T G C
p-value:1e-6
log p-value:-1.433e+01
Information Content per bp:1.763
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.61%
Number of Background Sequences with motif9.5
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets52.0 +/- 29.8bp
Average Position of motif in Background55.3 +/- 15.9bp
Strand Bias (log2 ratio + to - strand density)2.8
Multiplicity (# of sites on avg that occur together)1.60
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GCM1/MA0646.1/Jaspar

Match Rank:1
Score:0.67
Offset:6
Orientation:reverse strand
Alignment:GGGGMHGTTCCCGCAK-
------GTACCCGCATN
 A T C G A C T G A T C G A C T G T G A C G A T C A C T G A C G T G A C T A G T C A T G C G T A C A T C G A T G C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A C G A G C T T C G A T A G C T G A C G T A C C A T G A G T C C G T A A G C T T C A G

GCM2/MA0767.1/Jaspar

Match Rank:2
Score:0.64
Offset:7
Orientation:reverse strand
Alignment:GGGGMHGTTCCCGCAK-
-------TACCCGCATN
 A T C G A C T G A T C G A C T G T G A C G A T C A C T G A C G T G A C T A G T C A T G C G T A C A T C G A T G C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T C T G A A G T C G T A C G T A C T A C G A G T C T C G A A G C T T G C A

PB0024.1_Gcm1_1/Jaspar

Match Rank:3
Score:0.63
Offset:4
Orientation:forward strand
Alignment:GGGGMHGTTCCCGCAK----
----TCGTACCCGCATCATT
 A T C G A C T G A T C G A C T G T G A C G A T C A C T G A C G T G A C T A G T C A T G C G T A C A T C G A T G C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C A T T G A C T C A G C G A T T C G A G T A C G T A C G T A C A T C G A G T C C G T A A G C T T A G C C G T A G A C T C A G T

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:4
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GGGGMHGTTCCCGCAK
NGGGGATTTCCC----
 A T C G A C T G A T C G A C T G T G A C G A T C A C T G A C G T G A C T A G T C A T G C G T A C A T C G A T G C C G T A A C G T
C G T A C A T G C A T G A C T G C T A G T C G A G C A T C G A T A G C T A G T C G A T C G T A C A C G T A C G T A C G T A C G T

MF0003.1_REL_class/Jaspar

Match Rank:5
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GGGGMHGTTCCCGCAK
-GGGGATTTCC-----
 A T C G A C T G A T C G A C T G T G A C G A T C A C T G A C G T G A C T A G T C A T G C G T A C A T C G A T G C C G T A A C G T
A C G T A T C G A C T G C A T G C T A G G C T A C G A T A G C T G A C T G A T C G T A C A C G T A C G T A C G T A C G T A C G T

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:6
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GGGGMHGTTCCCGCAK
GGGGGAATCCCC----
 A T C G A C T G A T C G A C T G T G A C G A T C A C T G A C G T G A C T A G T C A T G C G T A C A T C G A T G C C G T A A C G T
T C A G C T A G C T A G C T A G T C A G T C G A C T G A C G A T A G T C G A T C A G T C T G A C A C G T A C G T A C G T A C G T

RELA/MA0107.1/Jaspar

Match Rank:7
Score:0.59
Offset:1
Orientation:forward strand
Alignment:GGGGMHGTTCCCGCAK
-GGGAATTTCC-----
 A T C G A C T G A T C G A C T G T G A C G A T C A C T G A C G T G A C T A G T C A T G C G T A C A T C G A T G C C G T A A C G T
A C G T A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C A C G T A C G T A C G T A C G T A C G T

REL/MA0101.1/Jaspar

Match Rank:8
Score:0.59
Offset:1
Orientation:forward strand
Alignment:GGGGMHGTTCCCGCAK
-GGGGATTTCC-----
 A T C G A C T G A T C G A C T G T G A C G A T C A C T G A C G T G A C T A G T C A T G C G T A C A T C G A T G C C G T A A C G T
A C G T A T C G A C T G C A T G C T A G G T C A C G A T C G A T C G A T A G T C G T A C A C G T A C G T A C G T A C G T A C G T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:9
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GGGGMHGTTCCCGCAK
-GGGAATTTCC-----
 A T C G A C T G A T C G A C T G T G A C G A T C A C T G A C G T G A C T A G T C A T G C G T A C A T C G A T G C C G T A A C G T
A C G T A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C A C G T A C G T A C G T A C G T A C G T

NFKB2/MA0778.1/Jaspar

Match Rank:10
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GGGGMHGTTCCCGCAK
AGGGGAATCCCCT---
 A T C G A C T G A T C G A C T G T G A C G A T C A C T G A C G T G A C T A G T C A T G C G T A C A T C G A T G C C G T A A C G T
T C G A C T A G C A T G C A T G C T A G C T G A C G T A A C G T G A T C G T A C G T A C A G T C A C G T A C G T A C G T A C G T