Information for 12-AGGVAAATKCACT (Motif 27)

C G T A A C T G A C T G T C A G G T C A C T G A C G T A C G A T C A T G G T A C G T C A G T A C A C G T
Reverse Opposite:
C G T A C A T G A C G T A C T G G T A C C G T A A C G T A G C T A C G T A G T C A G T C G T A C A C G T
p-value:1e-10
log p-value:-2.378e+01
Information Content per bp:1.768
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.55%
Number of Background Sequences with motif40.1
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets46.3 +/- 26.5bp
Average Position of motif in Background56.0 +/- 20.6bp
Strand Bias (log2 ratio + to - strand density)-0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POU2F2/MA0507.1/Jaspar

Match Rank:1
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--AGGVAAATKCACT
ATATGCAAATNNN--
 A C G T A C G T C G T A A C T G A C T G T C A G G T C A C T G A C G T A C G A T C A T G G T A C G T C A G T A C A C G T
C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A A C G T A C G T

PH0144.1_Pou2f2/Jaspar

Match Rank:2
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----AGGVAAATKCACT
TTGTATGCAAATTAGA-
 A C G T A C G T A C G T A C G T C G T A A C T G A C T G T C A G G T C A C T G A C G T A C G A T C A T G G T A C G T C A G T A C A C G T
A G C T G C A T C A T G G C A T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A C T A G T G C A A C G T

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:3
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--AGGVAAATKCACT
ATATGCAAAT-----
 A C G T A C G T C G T A A C T G A C T G T C A G G T C A C T G A C G T A C G A T C A T G G T A C G T C A G T A C A C G T
G T C A G C A T G C T A C A G T C T A G G A T C C G T A C T G A C G T A C G A T A C G T A C G T A C G T A C G T A C G T

Pou2f3/MA0627.1/Jaspar

Match Rank:4
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----AGGVAAATKCACT
TTGTATGCAAATTAGA-
 A C G T A C G T A C G T A C G T C G T A A C T G A C T G T C A G G T C A C T G A C G T A C G A T C A T G G T A C G T C A G T A C A C G T
A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A A C G T

PH0145.1_Pou2f3/Jaspar

Match Rank:5
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----AGGVAAATKCACT
TTGTATGCAAATTAGA-
 A C G T A C G T A C G T A C G T C G T A A C T G A C T G T C A G G T C A C T G A C G T A C G A T C A T G G T A C G T C A G T A C A C G T
A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A A C G T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--AGGVAAATKCACT
TTATGCAAAT-----
 A C G T A C G T C G T A A C T G A C T G T C A G G T C A C T G A C G T A C G A T C A T G G T A C G T C A G T A C A C G T
C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T A C G T A C G T A C G T A C G T A C G T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:7
Score:0.59
Offset:2
Orientation:forward strand
Alignment:AGGVAAATKCACT
--GGAAATTCCC-
 C G T A A C T G A C T G T C A G G T C A C T G A C G T A C G A T C A T G G T A C G T C A G T A C A C G T
A C G T A C G T A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C A C G T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:8
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-AGGVAAATKCACT
TATGCWAATBAV--
 A C G T C G T A A C T G A C T G T C A G G T C A C T G A C G T A C G A T C A T G G T A C G T C A G T A C A C G T
G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G A C G T A C G T

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:9
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:AGGVAAATKCACT
-GGGAAATCCCCN
 C G T A A C T G A C T G T C A G G T C A C T G A C G T A C G A T C A T G G T A C G T C A G T A C A C G T
A C G T C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T

POU5F1B/MA0792.1/Jaspar

Match Rank:10
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-AGGVAAATKCACT
TATGCAAAT-----
 A C G T C G T A A C T G A C T G T C A G G T C A C T G A C G T A C G A T C A T G G T A C G T C A G T A C A C G T
G A C T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T A C G T A C G T A C G T A C G T A C G T