Information for 5-CAGTGACATACTT (Motif 6)

G A T C C G T A T C A G A C G T A C T G C G T A A T G C C G T A A C G T G C T A A G T C C G A T A C G T
Reverse Opposite:
C G T A C G T A C T A G C A G T T C G A A C G T A T C G A C G T A G T C G T C A A G T C C G A T C T A G
p-value:1e-11
log p-value:-2.738e+01
Information Content per bp:1.801
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.85%
Number of Background Sequences with motif36.0
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets43.6 +/- 26.3bp
Average Position of motif in Background46.3 +/- 27.3bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:1
Score:0.70
Offset:3
Orientation:reverse strand
Alignment:CAGTGACATACTT
---TGACCTARTT
 G A T C C G T A T C A G A C G T A C T G C G T A A T G C C G T A A C G T G C T A A G T C C G A T A C G T
A C G T A C G T A C G T A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:2
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:CAGTGACATACTT---
--TTGACCTANTTATN
 G A T C C G T A T C A G A C G T A C T G C G T A A T G C C G T A A C G T G C T A A G T C C G A T A C G T A C G T A C G T A C G T
A C G T A C G T A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A

MEIS1/MA0498.2/Jaspar

Match Rank:3
Score:0.66
Offset:2
Orientation:forward strand
Alignment:CAGTGACATACTT
--TTGACAG----
 G A T C C G T A T C A G A C G T A C T G C G T A A T G C C G T A A C G T G C T A A G T C C G A T A C G T
A C G T A C G T G C A T G C A T A T C G T G C A A G T C C T G A C T A G A C G T A C G T A C G T A C G T

MEIS3/MA0775.1/Jaspar

Match Rank:4
Score:0.62
Offset:2
Orientation:forward strand
Alignment:CAGTGACATACTT
--TTGACAGG---
 G A T C C G T A T C A G A C G T A C T G C G T A A T G C C G T A A C G T G C T A A G T C C G A T A C G T
A C G T A C G T C G A T G C A T A T C G C T G A G A T C C T G A A C T G A T C G A C G T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CAGTGACATACTT
AGGTGHCAGACA-
 G A T C C G T A T C A G A C G T A C T G C G T A A T G C C G T A A C G T G C T A A G T C C G A T A C G T
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:6
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CAGTGACATACTT
ARNTGACA-----
 G A T C C G T A T C A G A C G T A C T G C G T A A T G C C G T A A C G T G C T A A G T C C G A T A C G T
T G C A C T A G G A T C A C G T C T A G C G T A G T A C T C G A A C G T A C G T A C G T A C G T A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:7
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:CAGTGACATACTT
-VBTGWCAGCB--
 G A T C C G T A T C A G A C G T A C T G C G T A A T G C C G T A A C G T G C T A A G T C C G A T A C G T
A C G T T C A G A T G C A C G T A C T G C G T A A G T C C G T A A T C G A T G C A G T C A C G T A C G T

Pax2/MA0067.1/Jaspar

Match Rank:8
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CAGTGACATACTT
NCGTGACN-----
 G A T C C G T A T C A G A C G T A C T G C G T A A T G C C G T A A C G T G C T A A G T C C G A T A C G T
T A C G G T A C C T A G A G C T T C A G C G T A G A T C C G A T A C G T A C G T A C G T A C G T A C G T

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:9
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CAGTGACATACTT
-RHTGWCAR----
 G A T C C G T A T C A G A C G T A C T G C G T A A T G C C G T A A C G T G C T A A G T C C G A T A C G T
A C G T C T A G G T A C A G C T C T A G G C T A G A T C C G T A C T G A A C G T A C G T A C G T A C G T

Atf1/MA0604.1/Jaspar

Match Rank:10
Score:0.58
Offset:2
Orientation:forward strand
Alignment:CAGTGACATACTT
--ATGACGTA---
 G A T C C G T A T C A G A C G T A C T G C G T A A T G C C G T A A C G T G C T A A G T C C G A T A C G T
A C G T A C G T T C G A G C A T A C T G C G T A A G T C C T A G G A C T T C G A A C G T A C G T A C G T