Information for 10-GCCATAGAGACGG (Motif 13)

A C T G A G T C A G T C C G T A A C G T C G T A A C T G C G T A A C T G C G T A A G T C C A T G A C T G
Reverse Opposite:
A G T C G A T C A C T G A C G T G T A C A C G T A G T C A C G T C G T A A C G T A C T G A C T G A G T C
p-value:1e-7
log p-value:-1.652e+01
Information Content per bp:1.928
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.47%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets48.0 +/- 20.6bp
Average Position of motif in Background28.8 +/- 13.8bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0160.1_Rfxdc2_2/Jaspar

Match Rank:1
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-GCCATAGAGACGG---
CTACTTGGATACGGAAT
 A C G T A C T G A G T C A G T C C G T A A C G T C G T A A C T G C G T A A C T G C G T A A G T C C A T G A C T G A C G T A C G T A C G T
A T G C A C G T T C G A A T G C C A G T G A C T T C A G A C T G C G T A A C G T C G T A G A T C T A C G T A C G C G T A C G T A G C A T

PB0159.1_Rfx4_2/Jaspar

Match Rank:2
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GCCATAGAGACGG-
TACCCTAGTTACCGA
 A C G T A C T G A G T C A G T C C G T A A C G T C G T A A C T G C G T A A C T G C G T A A G T C C A T G A C T G A C G T
G C A T G T C A A T G C A T G C G T A C C A G T T C G A A C T G C G A T A C G T C G T A A G T C T A G C T A C G G T C A

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:3
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GCCATAGAGACGG
TTGCCATGGCAACN-
 A C G T A C G T A C T G A G T C A G T C C G T A A C G T C G T A A C T G C G T A A C T G C G T A A G T C C A T G A C T G
A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C A C G T

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:4
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---GCCATAGAGACGG
GTTGCCATGGCAACCG
 A C G T A C G T A C G T A C T G A G T C A G T C C G T A A C G T C G T A A C T G C G T A A C T G C G T A A G T C C A T G A C T G
C T A G A G C T G A C T C T A G A G T C A G T C G T C A C G A T T C A G T C A G G A T C C T G A T C G A G A T C T A G C T C A G

RFX4/MA0799.1/Jaspar

Match Rank:5
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----GCCATAGAGACGG
CGTTGCCATGGCAACN-
 A C G T A C G T A C G T A C G T A C T G A G T C A G T C C G T A A C G T C G T A A C T G C G T A A C T G C G T A A G T C C A T G A C T G
A T G C C T A G A G C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C G T A G A T C T A C G A C G T

RFX3/MA0798.1/Jaspar

Match Rank:6
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----GCCATAGAGACGG
CGTTGCCATGGCAACG-
 A C G T A C G T A C G T A C G T A C T G A G T C A G T C C G T A A C G T C G T A A C T G C G T A A C T G C G T A A G T C C A T G A C T G
A T G C C T A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A T C G A G A T C T A C G A C G T

PB0158.1_Rfx3_2/Jaspar

Match Rank:7
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----GCCATAGAGACGG-----
ACTGACCCTTGGTTACCACAAAG
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C A G T C C G T A A C G T C G T A A C T G C G T A A C T G C G T A A G T C C A T G A C T G A C G T A C G T A C G T A C G T A C G T
T G C A A G T C A C G T A T C G G C T A A T G C T A C G A T G C G C A T C G A T T C A G A C T G C G A T C A G T C G T A G A T C T G A C T C G A T G A C T C G A T C G A C G T A A T C G

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GCCATAGAGACGG
-SCCTAGCAACAG
 A C T G A G T C A G T C C G T A A C G T C G T A A C T G C G T A A C T G C G T A A G T C C A T G A C T G
A C G T A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G

PB0055.1_Rfx4_1/Jaspar

Match Rank:9
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GCCATAGAGACGG-
TACCATAGCAACGGT
 A C G T A C T G A G T C A G T C C G T A A C G T C G T A A C T G C G T A A C T G C G T A A G T C C A T G A C T G A C G T
A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T

Rfx1/MA0509.1/Jaspar

Match Rank:10
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---GCCATAGAGACGG
GTTGCCATGGCAAC--
 A C G T A C G T A C G T A C T G A G T C A G T C C G T A A C G T C G T A A C T G C G T A A C T G C G T A A G T C C A T G A C T G
C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C A C G T A C G T