Information for 17-GCCTAAGTAACAT (Motif 27)

C A T G A G T C G T A C C G A T C T G A C G T A C A T G C G A T C G T A C G T A G T A C G T C A C A G T
Reverse Opposite:
G C T A A C G T C A T G C G A T G A C T C G T A G T A C G A C T A G C T G C T A A C T G T A C G G A T C
p-value:1e-8
log p-value:-2.063e+01
Information Content per bp:1.687
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.76%
Number of Background Sequences with motif82.7
Percentage of Background Sequences with motif0.17%
Average Position of motif in Targets50.0 +/- 26.0bp
Average Position of motif in Background52.7 +/- 22.0bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

mix-a/MA0621.1/Jaspar

Match Rank:1
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:GCCTAAGTAACAT
-NCTAATTAANN-
 C A T G A G T C G T A C C G A T C T G A C G T A C A T G C G A T C G T A C G T A G T A C G T C A C A G T
A C G T G T C A G A T C A C G T C G T A C G T A A C G T A C G T C G T A C T G A G A C T A C G T A C G T

LBX1/MA0618.1/Jaspar

Match Rank:2
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:GCCTAAGTAACAT
--CTAATTAA---
 C A T G A G T C G T A C C G A T C T G A C G T A C A T G C G A T C G T A C G T A G T A C G T C A C A G T
A C G T A C G T T A G C A G C T G C T A C T G A A C G T A C G T C T G A G C T A A C G T A C G T A C G T

LHX2/MA0700.1/Jaspar

Match Rank:3
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GCCTAAGTAACAT
-ACTAATTAAC--
 C A T G A G T C G T A C C G A T C T G A C G T A C A T G C G A T C G T A C G T A G T A C G T C A C A G T
A C G T T C G A A G T C G A C T G T C A C T G A A C G T A C G T C T G A C T G A A T G C A C G T A C G T

PH0168.1_Hnf1b/Jaspar

Match Rank:4
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--GCCTAAGTAACAT--
ANNNCTAGTTAACNGNN
 A C G T A C G T C A T G A G T C G T A C C G A T C T G A C G T A C A T G C G A T C G T A C G T A G T A C G T C A C A G T A C G T A C G T
C T G A T A G C C T A G T C A G A G T C G C A T T C G A C T A G C A G T C G A T C G T A C G T A A G T C T G C A C T A G T G A C G C A T

Arid3b/MA0601.1/Jaspar

Match Rank:5
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:GCCTAAGTAACAT
--NTAATTAATAT
 C A T G A G T C G T A C C G A T C T G A C G T A C A T G C G A T C G T A C G T A G T A C G T C A C A G T
A C G T A C G T A C G T A C G T C G T A C G T A C G A T A C G T C G T A C G T A C G A T C G T A A C G T

PB0186.1_Tcf3_2/Jaspar

Match Rank:6
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GCCTAAGTAACAT-
AGCCGAAAAAAAAAT
 A C G T C A T G A G T C G T A C C G A T C T G A C G T A C A T G C G A T C G T A C G T A G T A C G T C A C A G T A C G T
C T G A T A C G A T G C T A G C A C T G C G T A C T G A G C T A G C T A G C T A T G C A G C T A T C G A G C T A G C A T

POU1F1/MA0784.1/Jaspar

Match Rank:7
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:GCCTAAGTAACAT---
--CTAATTTGCATATT
 C A T G A G T C G T A C C G A T C T G A C G T A C A T G C G A T C G T A C G T A G T A C G T C A C A G T A C G T A C G T A C G T
A C G T A C G T G A T C G C A T T G C A G C T A C A G T G C A T C G A T T C A G G T A C C T G A G A C T G C T A G C A T G C A T

PH0036.1_Gsx2/Jaspar

Match Rank:8
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---GCCTAAGTAACAT
NTNNGCTAATTANCNT
 A C G T A C G T A C G T C A T G A G T C G T A C C G A T C T G A C G T A C A T G C G A T C G T A C G T A G T A C G T C A C A G T
G T C A G A C T T A G C T C G A C T A G A G T C G A C T G T C A C G T A C G A T A C G T C T G A T C G A G A T C A T G C A G C T

PH0143.1_Pou2f1/Jaspar

Match Rank:9
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GCCTAAGTAACAT--
TACTTAATTAATNNAN
 A C G T C A T G A G T C G T A C C G A T C T G A C G T A C A T G C G A T C G T A C G T A G T A C G T C A C A G T A C G T A C G T
G C A T C G T A T G A C G A C T C G A T G T C A C G T A C G A T A C G T C G T A C G T A G A C T C G T A G A C T C T G A G A C T

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:10
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GCCTAAGTAACAT
-NCTAATTA----
 C A T G A G T C G T A C C G A T C T G A C G T A C A T G C G A T C G T A C G T A G T A C G T C A C A G T
A C G T T A C G A G T C A G C T G T C A C G T A A C G T A C G T C T G A A C G T A C G T A C G T A C G T