Information for 14-HTTCTCTAATCCA (Motif 20)

G A C T C G A T G A C T A G T C A C G T A G T C A C G T C T G A C G T A A C G T A G T C A G T C G T C A
Reverse Opposite:
A C G T A C T G A C T G C G T A A C G T A G C T C G T A C T A G C G T A C T A G C T G A C G T A C G T A
p-value:1e-10
log p-value:-2.454e+01
Information Content per bp:1.823
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.22%
Number of Background Sequences with motif18.4
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets65.2 +/- 20.8bp
Average Position of motif in Background46.5 +/- 20.2bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:1
Score:0.76
Offset:4
Orientation:forward strand
Alignment:HTTCTCTAATCCA
----GCTAATCC-
 G A C T C G A T G A C T A G T C A C G T A G T C A C G T C T G A C G T A A C G T A G T C A G T C G T C A
A C G T A C G T A C G T A C G T A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C A C G T

Pitx1/MA0682.1/Jaspar

Match Rank:2
Score:0.75
Offset:5
Orientation:forward strand
Alignment:HTTCTCTAATCCA
-----TTAATCCC
 G A C T C G A T G A C T A G T C A C G T A G T C A C G T C T G A C G T A A C G T A G T C A G T C G T C A
A C G T A C G T A C G T A C G T A C G T G A C T G C A T T C G A C G T A C A G T G A T C G A T C G T A C

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:3
Score:0.74
Offset:5
Orientation:reverse strand
Alignment:HTTCTCTAATCCA
-----YTAATCCY
 G A C T C G A T G A C T A G T C A C G T A G T C A C G T C T G A C G T A A C G T A G T C A G T C G T C A
A C G T A C G T A C G T A C G T A C G T G A T C G C A T C G T A C G T A A C G T G A T C G A T C A G T C

RHOXF1/MA0719.1/Jaspar

Match Rank:4
Score:0.74
Offset:5
Orientation:forward strand
Alignment:HTTCTCTAATCCA
-----ATAATCCC
 G A C T C G A T G A C T A G T C A C G T A G T C A C G T C T G A C G T A A C G T A G T C A G T C G T C A
A C G T A C G T A C G T A C G T A C G T G C T A C G A T C T G A C G T A A C G T A G T C A G T C G T A C

PITX3/MA0714.1/Jaspar

Match Rank:5
Score:0.74
Offset:4
Orientation:forward strand
Alignment:HTTCTCTAATCCA
----CTTAATCCC
 G A C T C G A T G A C T A G T C A C G T A G T C A C G T C T G A C G T A A C G T A G T C A G T C G T C A
A C G T A C G T A C G T A C G T T A G C G A C T G C A T C T G A C T G A C A G T G T A C A G T C G A T C

GSC/MA0648.1/Jaspar

Match Rank:6
Score:0.74
Offset:4
Orientation:forward strand
Alignment:HTTCTCTAATCCA-
----GCTAATCCCC
 G A C T C G A T G A C T A G T C A C G T A G T C A C G T C T G A C G T A A C G T A G T C A G T C G T C A A C G T
A C G T A C G T A C G T A C G T T A C G G A T C A G C T C T G A C G T A A C G T A G T C A G T C A T G C G A T C

PB0185.1_Tcf1_2/Jaspar

Match Rank:7
Score:0.73
Offset:4
Orientation:reverse strand
Alignment:HTTCTCTAATCCA-----
----NNTAATCCNGNCNN
 G A C T C G A T G A C T A G T C A C G T A G T C A C G T C T G A C G T A A C G T A G T C A G T C G T C A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G A T C G T A C G C A T T G C A G T C A G A C T G T A C A G T C T C A G A T C G C T A G A G T C T G C A C G T A

GSC2/MA0891.1/Jaspar

Match Rank:8
Score:0.73
Offset:4
Orientation:forward strand
Alignment:HTTCTCTAATCCA-
----CCTAATCCGC
 G A C T C G A T G A C T A G T C A C G T A G T C A C G T C T G A C G T A A C G T A G T C A G T C G T C A A C G T
A C G T A C G T A C G T A C G T T G A C G A T C C G A T G C T A G C T A A C G T G T A C A G T C A T C G G A T C

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:9
Score:0.73
Offset:4
Orientation:forward strand
Alignment:HTTCTCTAATCCA-
----NYTAATCCYB
 G A C T C G A T G A C T A G T C A C G T A G T C A C G T C T G A C G T A A C G T A G T C A G T C G T C A A C G T
A C G T A C G T A C G T A C G T A T C G G A C T C G A T C G T A C G T A C A G T G A T C G A T C G A T C A G C T

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:10
Score:0.72
Offset:6
Orientation:forward strand
Alignment:HTTCTCTAATCCA-
------TAATCCCN
 G A C T C G A T G A C T A G T C A C G T A G T C A C G T C T G A C G T A A C G T A G T C A G T C G T C A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G A T C T G A C G T A C A G T A G T C G A T C G A T C A C T G