Information for 13-GAGCAGGGAGCGG (Motif 19)

A T C G C G T A A T C G A T G C C T G A T A C G C T A G T A C G T C G A C T A G A G T C C T A G T A C G
Reverse Opposite:
A G T C G A T C T C A G A G T C A C G T A G T C A G T C A G T C A G C T A T C G A T G C C G A T A T G C
p-value:1e-10
log p-value:-2.494e+01
Information Content per bp:1.755
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif2.57%
Number of Background Sequences with motif156.5
Percentage of Background Sequences with motif0.33%
Average Position of motif in Targets51.1 +/- 24.9bp
Average Position of motif in Background49.1 +/- 31.8bp
Strand Bias (log2 ratio + to - strand density)0.9
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0076.1_Sp4_1/Jaspar

Match Rank:1
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:GAGCAGGGAGCGG----
NNNAAGGGGGCGGGNNN
 A T C G C G T A A T C G A T G C C T G A T A C G C T A G T A C G T C G A C T A G A G T C C T A G T A C G A C G T A C G T A C G T A C G T
T A C G T C G A A T C G C T G A C T G A C T A G C A T G C T A G A T C G A C T G G A T C A C T G A C T G C A T G C T G A G A T C T G A C

KLF5/MA0599.1/Jaspar

Match Rank:2
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:GAGCAGGGAGCGG-
----GGGGNGGGGC
 A T C G C G T A A T C G A T G C C T G A T A C G C T A G T A C G T C G A C T A G A G T C C T A G T A C G A C G T
A C G T A C G T A C G T A C G T C T A G C T A G A C T G A C T G G A T C A C T G C A T G C T A G C T A G T G A C

POL013.1_MED-1/Jaspar

Match Rank:3
Score:0.62
Offset:5
Orientation:reverse strand
Alignment:GAGCAGGGAGCGG
-----CGGAGC--
 A T C G C G T A A T C G A T G C C T G A T A C G C T A G T A C G T C G A C T A G A G T C C T A G T A C G
A C G T A C G T A C G T A C G T A C G T A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GAGCAGGGAGCGG
CACAGCAGGGGG---
 A C G T A C G T A T C G C G T A A T C G A T G C C T G A T A C G C T A G T A C G T C G A C T A G A G T C C T A G T A C G
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T A C G T

Klf4/MA0039.2/Jaspar

Match Rank:5
Score:0.60
Offset:4
Orientation:forward strand
Alignment:GAGCAGGGAGCGG-
----TGGGTGGGGC
 A T C G C G T A A T C G A T G C C T G A T A C G C T A G T A C G T C G A C T A G A G T C C T A G T A C G A C G T
A C G T A C G T A C G T A C G T C G A T T C A G C T A G A T C G G A C T C A T G A C T G C T A G A C T G A G T C

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:6
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---GAGCAGGGAGCGG
DCHCAGCAGGRGGCC-
 A C G T A C G T A C G T A T C G C G T A A T C G A T G C C T G A T A C G C T A G T A C G T C G A C T A G A G T C C T A G T A C G
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C A C G T

Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.59
Offset:5
Orientation:forward strand
Alignment:GAGCAGGGAGCGG
-----GGGGGGGG
 A T C G C G T A A T C G A T G C C T G A T A C G C T A G T A C G T C G A C T A G A G T C C T A G T A C G
A C G T A C G T A C G T A C G T A C G T C T A G A C T G C T A G T C A G T C A G T A C G C T A G A C T G

SP2/MA0516.1/Jaspar

Match Rank:8
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GAGCAGGGAGCGG---
-GGGNGGGGGCGGGGC
 A T C G C G T A A T C G A T G C C T G A T A C G C T A G T A C G T C G A C T A G A G T C C T A G T A C G A C G T A C G T A C G T
A C G T T A C G T A C G T A C G T C G A C T A G C T A G C T A G C T A G A C T G G T A C C T A G A T C G C T A G T C A G T A G C

KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer

Match Rank:9
Score:0.59
Offset:4
Orientation:forward strand
Alignment:GAGCAGGGAGCGG-
----DGGGYGKGGC
 A T C G C G T A A T C G A T G C C T G A T A C G C T A G T A C G T C G A C T A G A G T C C T A G T A C G A C G T
A C G T A C G T A C G T A C G T C G T A C T A G A C T G A C T G G A C T C T A G C A G T C T A G C A T G G A T C

EGR1/MA0162.2/Jaspar

Match Rank:10
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:GAGCAGGGAGCGG---
--GGCGGGGGCGGGGG
 A T C G C G T A A T C G A T G C C T G A T A C G C T A G T A C G T C G A C T A G A G T C C T A G T A C G A C G T A C G T A C G T
A C G T A C G T A C T G T A C G G T A C C T A G C A T G T C A G C T A G A C T G G A T C C T A G C A T G T C A G C T A G T A C G