Information for 9-GGRMARYTCCCTKNAG (Motif 11)

A C T G A T C G T C G A G T C A C G T A C T G A A G C T A G C T A G T C A G T C A G T C G C A T C A G T C T G A C T G A T C A G
Reverse Opposite:
A G T C G A C T G A C T G T C A C G T A C T A G A C T G T C A G T C G A C T G A G A C T G C A T C A G T A G C T A T G C A G T C
p-value:1e-11
log p-value:-2.722e+01
Information Content per bp:1.588
Number of Target Sequences with motif27.0
Percentage of Target Sequences with motif3.65%
Number of Background Sequences with motif307.4
Percentage of Background Sequences with motif0.65%
Average Position of motif in Targets54.2 +/- 25.6bp
Average Position of motif in Background50.1 +/- 32.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:1
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:GGRMARYTCCCTKNAG
GGGAAATCCCCN----
 A C T G A T C G T C G A G T C A C G T A C T G A A G C T A G C T A G T C A G T C A G T C G C A T C A G T C T G A C T G A T C A G
C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T A C G T A C G T A C G T A C G T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:2
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:GGRMARYTCCCTKNAG
GGGAATTTCC------
 A C T G A T C G T C G A G T C A C G T A C T G A A G C T A G C T A G T C A G T C A G T C G C A T C A G T C T G A C T G A T C A G
A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C A C G T A C G T A C G T A C G T A C G T A C G T

MF0003.1_REL_class/Jaspar

Match Rank:3
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GGRMARYTCCCTKNAG
GGGGATTTCC------
 A C T G A T C G T C G A G T C A C G T A C T G A A G C T A G C T A G T C A G T C A G T C G C A T C A G T C T G A C T G A T C A G
A T C G A C T G C A T G C T A G G C T A C G A T A G C T G A C T G A T C G T A C A C G T A C G T A C G T A C G T A C G T A C G T

RELA/MA0107.1/Jaspar

Match Rank:4
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GGRMARYTCCCTKNAG
GGGAATTTCC------
 A C T G A T C G T C G A G T C A C G T A C T G A A G C T A G C T A G T C A G T C A G T C G C A T C A G T C T G A C T G A T C A G
A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T

NFKB2/MA0778.1/Jaspar

Match Rank:5
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GGRMARYTCCCTKNAG
AGGGGAATCCCCT----
 A C G T A C T G A T C G T C G A G T C A C G T A C T G A A G C T A G C T A G T C A G T C A G T C G C A T C A G T C T G A C T G A T C A G
T C G A C T A G C A T G C A T G C T A G C T G A C G T A A C G T G A T C G T A C G T A C A G T C A C G T A C G T A C G T A C G T A C G T

REL/MA0101.1/Jaspar

Match Rank:6
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GGRMARYTCCCTKNAG
GGGGATTTCC------
 A C T G A T C G T C G A G T C A C G T A C T G A A G C T A G C T A G T C A G T C A G T C G C A T C A G T C T G A C T G A T C A G
A T C G A C T G C A T G C T A G G T C A C G A T C G A T C G A T A G T C G T A C A C G T A C G T A C G T A C G T A C G T A C G T

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:7
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GGRMARYTCCCTKNAG
TGGCAGNCTGCCAG---
 A C G T A C T G A T C G T C G A G T C A C G T A C T G A A G C T A G C T A G T C A G T C A G T C G C A T C A G T C T G A C T G A T C A G
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G A C G T A C G T A C G T

NFKB1/MA0105.4/Jaspar

Match Rank:8
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GGRMARYTCCCTKNAG
AGGGGATTCCCCT----
 A C G T A C T G A T C G T C G A G T C A C G T A C T G A A G C T A G C T A G T C A G T C A G T C G C A T C A G T C T G A C T G A T C A G
T G C A C T A G C A T G C A T G C T A G T C G A G C A T A G C T G A T C G T A C T A G C G A T C A C G T A C G T A C G T A C G T A C G T

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:9
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--GGRMARYTCCCTKNAG
TTGGCANNNTGCCAAG--
 A C G T A C G T A C T G A T C G T C G A G T C A C G T A C T G A A G C T A G C T A G T C A G T C A G T C G C A T C A G T C T G A C T G A T C A G
G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G A C G T A C G T

EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer

Match Rank:10
Score:0.55
Offset:5
Orientation:forward strand
Alignment:GGRMARYTCCCTKNAG
-----ATTTCCTGTN-
 A C T G A T C G T C G A G T C A C G T A C T G A A G C T A G C T A G T C A G T C A G T C G C A T C A G T C T G A C T G A T C A G
A C G T A C G T A C G T A C G T A C G T T C G A A G C T A C G T A C G T A G T C A G T C A C G T A T C G G A C T A T C G A C G T