Information for 5-AAATTMATGAAACATA (Motif 8)

G T C A G T C A C G T A A C G T A G C T G T C A C G T A C A G T C T A G C G T A T G C A C G T A A G T C C G T A A C G T T C G A
Reverse Opposite:
A G C T G T C A A C G T C T A G A C G T A C G T C G A T G A T C G T C A A C G T A C G T T C G A C G T A A C G T A C G T A C G T
p-value:1e-12
log p-value:-2.953e+01
Information Content per bp:1.742
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.43%
Number of Background Sequences with motif17.4
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets42.5 +/- 24.3bp
Average Position of motif in Background49.0 +/- 24.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0178.1_Sox8_2/Jaspar

Match Rank:1
Score:0.66
Offset:0
Orientation:forward strand
Alignment:AAATTMATGAAACATA
ACATTCATGACACG--
 G T C A G T C A C G T A A C G T A G C T G T C A C G T A C A G T C T A G C G T A T G C A C G T A A G T C C G T A A C G T T C G A
C G T A G A T C G C T A A C G T C G A T G A T C T C G A A C G T C T A G G C T A G T A C G T C A A T G C T A C G A C G T A C G T

OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:2
Score:0.61
Offset:2
Orientation:forward strand
Alignment:AAATTMATGAAACATA-
--ATGCATWATGCATRW
 G T C A G T C A C G T A A C G T A G C T G T C A C G T A C A G T C T A G C G T A T G C A C G T A A G T C C G T A A C G T T C G A A C G T
A C G T A C G T C G T A A C G T A C T G G T A C C G T A A C G T C G T A C G T A A C G T A C T G A G T C C G T A A C G T C T G A G C A T

OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:3
Score:0.61
Offset:2
Orientation:forward strand
Alignment:AAATTMATGAAACATA-
--ATGAATWATTCATGA
 G T C A G T C A C G T A A C G T A G C T G T C A C G T A C A G T C T A G C G T A T G C A C G T A A G T C C G T A A C G T T C G A A C G T
A C G T A C G T G T C A A C G T C T A G G T C A C G T A G C A T C G T A C G T A G C A T C A G T A G T C C G T A C A G T C T A G C T G A

PB0170.1_Sox17_2/Jaspar

Match Rank:4
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----AAATTMATGAAACATA
GACCACATTCATACAAT---
 A C G T A C G T A C G T A C G T G T C A G T C A C G T A A C G T A G C T G T C A C G T A C A G T C T A G C G T A T G C A C G T A A G T C C G T A A C G T T C G A
T A C G G C T A A G T C G T A C G T C A A G T C G C T A A G C T C G A T T G A C C T G A A G C T T C G A G A T C T C G A C G T A C G A T A C G T A C G T A C G T

Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer

Match Rank:5
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-AAATTMATGAAACATA-
YTAATTRAWWCCAGATGT
 A C G T G T C A G T C A C G T A A C G T A G C T G T C A C G T A C A G T C T A G C G T A T G C A C G T A A G T C C G T A A C G T T C G A A C G T
G A C T C G A T C T G A G T C A G A C T C G A T T C G A C G T A G C T A G C T A T G A C G T A C C G T A A C T G T G C A C G A T A C T G A C G T

POU4F1/MA0790.1/Jaspar

Match Rank:6
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:AAATTMATGAAACATA
-CATTAATTATTCAT-
 G T C A G T C A C G T A A C G T A G C T G T C A C G T A C A G T C T A G C G T A T G C A C G T A A G T C C G T A A C G T T C G A
A C G T G T A C C T G A A G C T G C A T G C T A G C T A G C A T G C A T C G T A C G A T C A G T G A T C C T G A A G C T A C G T

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:7
Score:0.56
Offset:2
Orientation:forward strand
Alignment:AAATTMATGAAACATA
--ATGCATAATTCA--
 G T C A G T C A C G T A A C G T A G C T G T C A C G T A C A G T C T A G C G T A T G C A C G T A A G T C C G T A A C G T T C G A
A C G T A C G T G C T A C G A T C T A G G T A C G C T A C G A T C G T A G C T A C G A T C A G T G A T C G C T A A C G T A C G T

PB0171.1_Sox18_2/Jaspar

Match Rank:8
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----AAATTMATGAAACATA
GGACTGAATTCATGCC-----
 A C G T A C G T A C G T A C G T A C G T G T C A G T C A C G T A A C G T A G C T G T C A C G T A C A G T C T A G C G T A T G C A C G T A A G T C C G T A A C G T T C G A
C T A G A C T G C T G A A T G C A G C T C T A G G T C A C T G A G A C T C A G T G A T C T C G A C G A T C T A G G T A C T G A C A C G T A C G T A C G T A C G T A C G T

Lhx3/MA0135.1/Jaspar

Match Rank:9
Score:0.55
Offset:0
Orientation:forward strand
Alignment:AAATTMATGAAACATA
AAATTAATTAATC---
 G T C A G T C A C G T A A C G T A G C T G T C A C G T A C A G T C T A G C G T A T G C A C G T A A G T C C G T A A C G T T C G A
C G T A T C G A C G T A A C G T A C G T C G T A C G T A G A C T A G C T G C T A C G T A G A C T A G T C A C G T A C G T A C G T

ONECUT3/MA0757.1/Jaspar

Match Rank:10
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---AAATTMATGAAACATA
AAAAAATCAATAAT-----
 A C G T A C G T A C G T G T C A G T C A C G T A A C G T A G C T G T C A C G T A C A G T C T A G C G T A T G C A C G T A A G T C C G T A A C G T T C G A
T C G A C T G A C G T A G C T A C T G A C T G A G A C T G T A C T C G A C G T A C G A T C G T A G C T A G C A T A C G T A C G T A C G T A C G T A C G T