Information for 2-AGCTTTGGTW (Motif 7)

C T G A C A T G G T A C G A C T A C G T A C G T A C T G A T C G C G A T C G T A
Reverse Opposite:
G C A T G C T A T A G C T G A C C G T A C G T A C T G A A C T G G T A C G A C T
p-value:1e-13
log p-value:-3.002e+01
Information Content per bp:1.692
Number of Target Sequences with motif24.0
Percentage of Target Sequences with motif3.44%
Number of Background Sequences with motif227.0
Percentage of Background Sequences with motif0.47%
Average Position of motif in Targets44.8 +/- 25.9bp
Average Position of motif in Background49.3 +/- 27.1bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox3/MA0514.1/Jaspar

Match Rank:1
Score:0.65
Offset:2
Orientation:forward strand
Alignment:AGCTTTGGTW--
--CCTTTGTTTT
 C T G A C A T G G T A C G A C T A C G T A C G T A C T G A T C G C G A T C G T A A C G T A C G T
A C G T A C G T A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T

Nr2e3/MA0164.1/Jaspar

Match Rank:2
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--AGCTTTGGTW
CAAGCTT-----
 A C G T A C G T C T G A C A T G G T A C G A C T A C G T A C G T A C T G A T C G C G A T C G T A
G A T C C G T A C G T A A T C G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0071.1_Sox4_1/Jaspar

Match Rank:3
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--AGCTTTGGTW-----
TNNTCCTTTGTTCTNNT
 A C G T A C G T C T G A C A T G G T A C G A C T A C G T A C G T A C T G A T C G C G A T C G T A A C G T A C G T A C G T A C G T A C G T
C G A T C G T A T C A G A G C T A G T C A G T C C G A T A C G T C G A T T A C G C G A T A G C T G A T C G C A T G A C T T G A C C A G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:4
Score:0.61
Offset:2
Orientation:forward strand
Alignment:AGCTTTGGTW
--CCWTTGTY
 C T G A C A T G G T A C G A C T A C G T A C G T A C T G A T C G C G A T C G T A
A C G T A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:5
Score:0.61
Offset:1
Orientation:forward strand
Alignment:AGCTTTGGTW-
-GCTGTGGTTT
 C T G A C A T G G T A C G A C T A C G T A C G T A C T G A T C G C G A T C G T A A C G T
A C G T A C T G G A T C G A C T A C T G A C G T C A T G A C T G A C G T A G C T C G A T

T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer

Match Rank:6
Score:0.61
Offset:1
Orientation:forward strand
Alignment:AGCTTTGGTW---
-ACTTTCGTTTCT
 C T G A C A T G G T A C G A C T A C G T A C G T A C T G A T C G C G A T C G T A A C G T A C G T A C G T
A C G T T G C A A T G C A C G T A C G T A C G T A T G C C T A G A C G T A C G T A G C T G A T C A G C T

PB0061.1_Sox11_1/Jaspar

Match Rank:7
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--AGCTTTGGTW-----
NNNTCCTTTGTTCTNNN
 A C G T A C G T C T G A C A T G G T A C G A C T A C G T A C G T A C T G A T C G C G A T C G T A A C G T A C G T A C G T A C G T A C G T
C G A T C G T A T C A G A G C T A G T C G A T C C G A T A C G T C G A T A C T G C G A T A G C T G A T C G C A T G C A T T G C A C G A T

Sox2/MA0143.3/Jaspar

Match Rank:8
Score:0.60
Offset:2
Orientation:forward strand
Alignment:AGCTTTGGTW
--CCTTTGTT
 C T G A C A T G G T A C G A C T A C G T A C G T A C T G A T C G C G A T C G T A
A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:9
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:AGCTTTGGTW-
-CCTTTGATGT
 C T G A C A T G G T A C G A C T A C G T A C G T A C T G A T C G C G A T C G T A A C G T
A C G T A T G C A G T C A C G T A C G T A C G T A T C G C G T A C G A T T A C G G A C T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:10
Score:0.58
Offset:1
Orientation:forward strand
Alignment:AGCTTTGGTW-
-CCWTTGTYYB
 C T G A C A T G G T A C G A C T A C G T A C G T A C T G A T C G C G A T C G T A A C G T
A C G T A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G