Information for 3-TAAGATTAATATG (Motif 5)

A C G T C G T A C G T A T A C G C G T A A C G T A C G T C G T A G T C A C G A T C T G A A C G T A C T G
Reverse Opposite:
A G T C C G T A A G C T C G T A A C G T C G A T C G T A C G T A C G A T A T G C C G A T C G A T G T C A
p-value:1e-11
log p-value:-2.754e+01
Information Content per bp:1.834
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.95%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets68.6 +/- 22.1bp
Average Position of motif in Background80.0 +/- 4.8bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arid3b/MA0601.1/Jaspar

Match Rank:1
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:TAAGATTAATATG
-NTAATTAATAT-
 A C G T C G T A C G T A T A C G C G T A A C G T A C G T C G T A G T C A C G A T C T G A A C G T A C T G
A C G T A C G T A C G T C G T A C G T A C G A T A C G T C G T A C G T A C G A T C G T A A C G T A C G T

PB0174.1_Sox30_2/Jaspar

Match Rank:2
Score:0.61
Offset:0
Orientation:forward strand
Alignment:TAAGATTAATATG---
TAAGATTATAATACGG
 A C G T C G T A C G T A T A C G C G T A A C G T A C G T C G T A G T C A C G A T C T G A A C G T A C T G A C G T A C G T A C G T
G A C T G T C A C G T A A C T G G T C A C G A T A G C T G T C A A C G T T C G A C G T A C A G T T G C A T A G C T A C G T A C G

Arid5a/MA0602.1/Jaspar

Match Rank:3
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-TAAGATTAATATG
CTAATATTGCTAAA
 A C G T A C G T C G T A C G T A T A C G C G T A A C G T A C G T C G T A G T C A C G A T C T G A A C G T A C T G
T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A

PB0002.1_Arid5a_1/Jaspar

Match Rank:4
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-TAAGATTAATATG
CTAATATTGCTAAA
 A C G T A C G T C G T A C G T A T A C G C G T A A C G T A C G T C G T A G T C A C G A T C T G A A C G T A C T G
T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A

PB0079.1_Sry_1/Jaspar

Match Rank:5
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:TAAGATTAATATG---
NANTATTATAATTNNN
 A C G T C G T A C G T A T A C G C G T A A C G T A C G T C G T A G T C A C G A T C T G A A C G T A C T G A C G T A C G T A C G T
A C T G G C T A G C T A G A C T C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C G A T G T C A C G A T T G C A

GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:6
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:TAAGATTAATATG--
NNAGATNVNWATCTN
 A C G T C G T A C G T A T A C G C G T A A C G T A C G T C G T A G T C A C G A T C T G A A C G T A C T G A C G T A C G T
C T A G T G A C C G T A A C T G C G T A A C G T G C T A T C G A A G C T C G A T C G T A A C G T A G T C C G A T T A C G

PB0069.1_Sox21_1/Jaspar

Match Rank:7
Score:0.55
Offset:0
Orientation:forward strand
Alignment:TAAGATTAATATG---
TTTAATTATAATTAAG
 A C G T C G T A C G T A T A C G C G T A A C G T A C G T C G T A G T C A C G A T C T G A A C G T A C T G A C G T A C G T A C G T
G A C T G C A T G A C T G C T A C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C G A T C G T A C G T A C A T G

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:8
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:TAAGATTAATATG
-BTVATTWGCATA
 A C G T C G T A C G T A T A C G C G T A A C G T A C G T C G T A G T C A C G A T C T G A A C G T A C T G
A C G T A G T C C A G T T G C A G T C A A C G T A G C T C G A T T C A G G T A C C G T A A C G T C T G A

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:TAAGATTAATATG-----
---CATTGTTATGCAAAT
 A C G T C G T A C G T A T A C G C G T A A C G T A C G T C G T A G T C A C G A T C T G A A C G T A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G A T C G C T A G A C T C G A T A T C G C G A T G A C T C G T A C G A T C A T G A G T C C G T A C T G A C G T A C G A T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:10
Score:0.54
Offset:4
Orientation:forward strand
Alignment:TAAGATTAATATG-
----ATGMATATDC
 A C G T C G T A C G T A T A C G C G T A A C G T A C G T C G T A G T C A C G A T C T G A A C G T A C T G A C G T
A C G T A C G T A C G T A C G T G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C