Information for 19-ARAGCAACTGATH (Motif 26)

C G T A C T A G C T G A C T A G G A T C C G T A C G T A G A T C C G A T A T C G G T C A C G A T G T A C
Reverse Opposite:
C A T G G C T A A C G T A T G C C G T A C T A G A C G T A C G T C T A G G A T C A G C T G A T C C G A T
p-value:1e-6
log p-value:-1.556e+01
Information Content per bp:1.694
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif3.43%
Number of Background Sequences with motif372.8
Percentage of Background Sequences with motif0.75%
Average Position of motif in Targets51.1 +/- 29.3bp
Average Position of motif in Background52.1 +/- 26.7bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0066.1_Sox17_1/Jaspar

Match Rank:1
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-ARAGCAACTGATH-
ATAAACAATTAAACA
 A C G T C G T A C T A G C T G A C T A G G A T C C G T A C G T A G A T C C G A T A T C G G T C A C G A T G T A C A C G T
T G C A C G A T C T G A C G T A C G T A A G T C C G T A C G T A C G A T C G A T T C G A G C T A G C A T G A T C C G T A

PB0074.1_Sox8_1/Jaspar

Match Rank:2
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---ARAGCAACTGATH-
TNNAGAACAATANATNN
 A C G T A C G T A C G T C G T A C T A G C T G A C T A G G A T C C G T A C G T A G A T C C G A T A T C G G T C A C G A T G T A C A C G T
G C A T G C T A G T C A C G T A C A T G C T G A C G T A A G T C C G T A C T G A C G A T C G T A T C A G G C T A G C A T G T C A G T A C

PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:3
Score:0.65
Offset:0
Orientation:forward strand
Alignment:ARAGCAACTGATH
AGAGGAAGTG---
 C G T A C T A G C T G A C T A G G A T C C G T A C G T A G A T C C G A T A T C G G T C A C G A T G T A C
C G T A T A C G T C G A A C T G A C T G C G T A C G T A T A C G A G C T T A C G A C G T A C G T A C G T

PH0007.1_Barx1/Jaspar

Match Rank:4
Score:0.63
Offset:0
Orientation:forward strand
Alignment:ARAGCAACTGATH---
AAAGTAATTAGTGAAT
 C G T A C T A G C T G A C T A G G A T C C G T A C G T A G A T C C G A T A T C G G T C A C G A T G T A C A C G T A C G T A C G T
G T C A G T C A T C G A T A C G G A C T T G C A G T C A A C G T A C G T C T G A A T C G A G C T C A T G G C T A C G T A G C A T

PB0065.1_Sox15_1/Jaspar

Match Rank:5
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---ARAGCAACTGATH-
TAGTGAACAATAGATTT
 A C G T A C G T A C G T C G T A C T A G C T G A C T A G G A T C C G T A C G T A G A T C C G A T A T C G G T C A C G A T G T A C A C G T
G C A T C T A G C A T G C G A T C A T G C T G A C G T A G A T C C G T A C G T A G C A T C G T A C T A G C T G A A G C T G C A T A C G T

SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer

Match Rank:6
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--ARAGCAACTGATH
AAAGRGGAAGTG---
 A C G T A C G T C G T A C T A G C T G A C T A G G A T C C G T A C G T A G A T C C G A T A T C G G T C A C G A T G T A C
C G T A C T G A C G T A C T A G T C G A C T A G A C T G C G T A C G T A T A C G A G C T A T C G A C G T A C G T A C G T

BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer

Match Rank:7
Score:0.62
Offset:3
Orientation:forward strand
Alignment:ARAGCAACTGATH
---NHAACBGYYV
 C G T A C T A G C T G A C T A G G A T C C G T A C G T A G A T C C G A T A T C G G T C A C G A T G T A C
A C G T A C G T A C G T A G T C G C A T C G T A C G T A G T A C A C G T A C T G G A T C G A T C T C G A

PB0073.1_Sox7_1/Jaspar

Match Rank:8
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----ARAGCAACTGATH----
AATAAAGAACAATAGAATTTCA
 A C G T A C G T A C G T A C G T A C G T C G T A C T A G C T G A C T A G G A T C C G T A C G T A G A T C C G A T A T C G G T C A C G A T G T A C A C G T A C G T A C G T A C G T
G T C A G C T A A C G T C T G A G C T A C G T A C T A G C T G A C G T A A G T C C G T A C T G A C G A T C G T A T C A G G C T A G C T A G A C T G C A T G C A T A G T C G C T A

Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:9
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:ARAGCAACTGATH-
----TAATTGATTA
 C G T A C T A G C T G A C T A G G A T C C G T A C G T A G A T C C G A T A T C G G T C A C G A T G T A C A C G T
A C G T A C G T A C G T A C G T C G A T T C G A C G T A A G C T A C G T C T A G C T G A A C G T A G C T G C T A

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--ARAGCAACTGATH
SCCTAGCAACAG---
 A C G T A C G T C G T A C T A G C T G A C T A G G A T C C G T A C G T A G A T C C G A T A T C G G T C A C G A T G T A C
A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G A C G T A C G T A C G T