Information for 15-AATMARTCMAGCY (Motif 15)

C G T A C G T A A C G T G T A C C G T A C T G A A C G T A G T C G T C A C G T A A C T G A G T C A G C T
Reverse Opposite:
C T G A C T A G A G T C A C G T A C G T A C T G C G T A A G C T A C G T A C T G C G T A A C G T A C G T
p-value:1e-5
log p-value:-1.233e+01
Information Content per bp:1.878
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.49%
Number of Background Sequences with motif6.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets68.0 +/- 24.0bp
Average Position of motif in Background54.3 +/- 15.2bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.75
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PBX1/MA0070.1/Jaspar

Match Rank:1
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-AATMARTCMAGCY
CCATCAATCAAA--
 A C G T C G T A C G T A A C G T G T A C C G T A C T G A A C G T A G T C G T C A C G T A A C T G A G T C A G C T
G A T C A G T C T C G A G A C T A G T C G T C A C G T A A C G T A G T C G C T A C G T A C G T A A C G T A C G T

Hoxa9/MA0594.1/Jaspar

Match Rank:2
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--AATMARTCMAGCY
GCCATAAATCA----
 A C G T A C G T C G T A C G T A A C G T G T A C C G T A C T G A A C G T A G T C G T C A C G T A A C T G A G T C A G C T
T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A A C G T A C G T A C G T A C G T

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:3
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-AATMARTCMAGCY
TCATCAATCA----
 A C G T C G T A C G T A A C G T G T A C C G T A C T G A A C G T A G T C G T C A C G T A A C T G A G T C A G C T
G A C T G T A C T G C A A C G T G A T C G C T A T C G A A C G T A G T C C G T A A C G T A C G T A C G T A C G T

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:4
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---AATMARTCMAGCY
HNRAATCAAT------
 A C G T A C G T A C G T C G T A C G T A A C G T G T A C C G T A C T G A A C G T A G T C G T C A C G T A A C T G A G T C A G C T
G C T A A C T G T C G A C T G A C T G A A C G T T A G C C T G A C G T A C G A T A C G T A C G T A C G T A C G T A C G T A C G T

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:5
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---AATMARTCMAGCY
GGCCATAAATCA----
 A C G T A C G T A C G T C G T A C G T A A C G T G T A C C G T A C T G A A C G T A G T C G T C A C G T A A C T G A G T C A G C T
C T A G T A C G A G T C G T A C T C G A A C G T G T C A G C T A G C T A C G A T A G T C G C T A A C G T A C G T A C G T A C G T

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:6
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---AATMARTCMAGCY
RGCCATYAATCA----
 A C G T A C G T A C G T C G T A C G T A A C G T G T A C C G T A C T G A A C G T A G T C G T C A C G T A A C T G A G T C A G C T
C T A G T A C G G A T C T G A C T C G A A C G T G A C T G C T A T C G A A G C T G A T C G C T A A C G T A C G T A C G T A C G T

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:7
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--AATMARTCMAGCY
NNAATTAGTCACGGT
 A C G T A C G T C G T A C G T A A C G T G T A C C G T A C T G A A C G T A G T C G T C A C G T A A C T G A G T C A G C T
A G C T G A T C T C G A C G T A A C G T A G C T C G T A A C T G G A C T G A T C G T C A G A T C C T A G A T C G G C A T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:8
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--AATMARTCMAGCY
GYCATCMATCAT---
 A C G T A C G T C G T A C G T A A C G T G T A C C G T A C T G A A C G T A G T C G T C A C G T A A C T G A G T C A G C T
T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T A C G T A C G T A C G T

Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:9
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-AATMARTCMAGCY
TAATCAATTA----
 A C G T C G T A C G T A A C G T G T A C C G T A C T G A A C G T A G T C G T C A C G T A A C T G A G T C A G C T
C G A T C T G A C G T A A G C T A G T C T G C A C T G A A C G T A G C T G C T A A C G T A C G T A C G T A C G T

Hoxc9/MA0485.1/Jaspar

Match Rank:10
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---AATMARTCMAGCY
GGCCATAAATCAC---
 A C G T A C G T A C G T C G T A C G T A A C G T G T A C C G T A C T G A A C G T A G T C G T C A C G T A A C T G A G T C A G C T
C T A G T A C G G A T C G T A C C T G A A G C T T G C A C G T A G T C A C G A T G A T C G C T A A G T C A C G T A C G T A C G T