Information for 14-GCAGGCAGGCAGG (Motif 24)

A C T G A G T C G T C A A C T G A T C G A G T C C G T A A C T G A C T G A G T C C G T A A C T G C T A G
Reverse Opposite:
A G T C A G T C A C G T A C T G A G T C A G T C A C G T A C T G A T G C A G T C A C G T A C T G A G T C
p-value:1e-4
log p-value:-1.077e+01
Information Content per bp:1.924
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif1.94%
Number of Background Sequences with motif3.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets41.8 +/- 10.4bp
Average Position of motif in Background42.5 +/- 15.6bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:1
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:GCAGGCAGGCAGG--
SCAGYCADGCATGAC
 A C T G A G T C G T C A A C T G A T C G A G T C C G T A A C T G A C T G A G T C C G T A A C T G C T A G A C G T A C G T
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--GCAGGCAGGCAGG
TGGCAGNCTGCCAG-
 A C G T A C G T A C T G A G T C G T C A A C T G A T C G A G T C C G T A A C T G A C T G A G T C C G T A A C T G C T A G
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G A C G T

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GCAGGCAGGCAGG---
GCAGCCAAGCGTGACN
 A C T G A G T C G T C A A C T G A T C G A G T C C G T A A C T G A C T G A G T C C G T A A C T G C T A G A C G T A C G T A C G T
A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:4
Score:0.60
Offset:5
Orientation:forward strand
Alignment:GCAGGCAGGCAGG---
-----AAGGCAAGTGT
 A C T G A G T C G T C A A C T G A T C G A G T C C G T A A C T G A C T G A G T C C G T A A C T G C T A G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:5
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GCAGGCAGGCAGG
AGGTGNCAGACAG-
 A C G T A C T G A G T C G T C A A C T G A T C G A G T C C G T A A C T G A C T G A G T C C G T A A C T G C T A G
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T

EWSR1-FLI1/MA0149.1/Jaspar

Match Rank:6
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GCAGGCAGGCAGG----
GGAAGGAAGGAAGGAAGG
 A C G T A C T G A G T C G T C A A C T G A T C G A G T C C G T A A C T G A C T G A G T C C G T A A C T G C T A G A C G T A C G T A C G T A C G T
A C T G C T A G C T G A C T G A C T A G C T A G C T G A C T G A A C T G A T C G T G C A C G T A A C T G A T C G G T C A C T G A C T A G T A C G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:GCAGGCAGGCAGG
----CCAGACAG-
 A C T G A G T C G T C A A C T G A T C G A G T C C G T A A C T G A C T G A G T C C G T A A C T G C T A G
A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T

PAX5/MA0014.2/Jaspar

Match Rank:8
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----GCAGGCAGGCAGG--
GAGGGCAGCCAAGCGTGAC
 A C G T A C G T A C G T A C G T A C T G A G T C G T C A A C T G A T C G A G T C C G T A A C T G A C T G A G T C C G T A A C T G C T A G A C G T A C G T
T C A G C G T A T C A G C T A G A C T G G A T C C T G A T A C G A G T C T A G C T C G A C T G A A T C G A G T C C T A G C A G T C T A G C T G A G T A C

TFAP2C/MA0524.2/Jaspar

Match Rank:9
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GCAGGCAGGCAGG
TGCCCCAGGGCA--
 A C G T A C T G A G T C G T C A A C T G A T C G A G T C C G T A A C T G A C T G A G T C C G T A A C T G C T A G
G A C T T A C G T A G C G A T C A G T C A G T C T C G A T C A G C T A G T A C G A T G C C T G A A C G T A C G T

TFAP2A(var.2)/MA0810.1/Jaspar

Match Rank:10
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GCAGGCAGGCAGG
TGCCCCCGGGCA--
 A C G T A C T G A G T C G T C A A C T G A T C G A G T C C G T A A C T G A C T G A G T C C G T A A C T G C T A G
G A C T T A C G T A G C A G T C A G T C A G T C T G A C T C A G T C A G A T C G A T G C C T G A A C G T A C G T