Information for 9-AAWWAGCACATACTAA (Motif 12)

C G T A C T G A C G A T C G A T C G T A C T A G A G T C C G T A A G T C C G T A A C G T C G T A T A G C A C G T C G T A C G T A
Reverse Opposite:
A C G T A C G T C G T A A C T G C G A T C G T A A C G T A C T G A C G T A C T G A G T C A C G T C G A T C G A T A G C T A C G T
p-value:1e-8
log p-value:-2.021e+01
Information Content per bp:1.862
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif2.91%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets51.8 +/- 22.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.67
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0096.1_Zfp187_1/Jaspar

Match Rank:1
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-AAWWAGCACATACTAA
TTATTAGTACATAN---
 A C G T C G T A C T G A C G A T C G A T C G T A C T A G A G T C C G T A A G T C C G T A A C G T C G T A T A G C A C G T C G T A C G T A
C A G T C G A T C G T A G A C T C G A T T C G A C T A G G A C T G C T A A G T C C T G A A G C T C T G A T C G A A C G T A C G T A C G T

PB0208.1_Zscan4_2/Jaspar

Match Rank:2
Score:0.61
Offset:1
Orientation:forward strand
Alignment:AAWWAGCACATACTAA-
-CGAAGCACACAAAATA
 C G T A C T G A C G A T C G A T C G T A C T A G A G T C C G T A A G T C C G T A A C G T C G T A T A G C A C G T C G T A C G T A A C G T
A C G T G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

PB0130.1_Gm397_2/Jaspar

Match Rank:3
Score:0.55
Offset:1
Orientation:forward strand
Alignment:AAWWAGCACATACTAA-
-AGCGGCACACACGCAA
 C G T A C T G A C G A T C G A T C G T A C T A G A G T C C G T A A G T C C G T A A C G T C G T A T A G C A C G T C G T A C G T A A C G T
A C G T C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:4
Score:0.55
Offset:1
Orientation:forward strand
Alignment:AAWWAGCACATACTAA
-NWAACCACADNN---
 C G T A C T G A C G A T C G A T C G T A C T A G A G T C C G T A A G T C C G T A A C G T C G T A T A G C A C G T C G T A C G T A
A C G T T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C A C G T A C G T A C G T

Hoxb5/MA0904.1/Jaspar

Match Rank:5
Score:0.54
Offset:-5
Orientation:forward strand
Alignment:-----AAWWAGCACATACTAA
ACGGTAATTAGCTCAT-----
 A C G T A C G T A C G T A C G T A C G T C G T A C T G A C G A T C G A T C G T A C T A G A G T C C G T A A G T C C G T A A C G T C G T A T A G C A C G T C G T A C G T A
T G C A G T A C C T A G A C T G G A C T G T C A G C T A C A G T A C G T C T G A T A C G G A T C G C A T G T A C C G T A G C A T A C G T A C G T A C G T A C G T A C G T

PH0060.1_Hoxb5/Jaspar

Match Rank:6
Score:0.54
Offset:-5
Orientation:forward strand
Alignment:-----AAWWAGCACATACTAA
ACGGTAATTAGCTCAT-----
 A C G T A C G T A C G T A C G T A C G T C G T A C T G A C G A T C G A T C G T A C T A G A G T C C G T A A G T C C G T A A C G T C G T A T A G C A C G T C G T A C G T A
T G C A G T A C C T A G A C T G G A C T G T C A G C T A C A G T A C G T C T G A T A C G G A T C G C A T G T A C C G T A G C A T A C G T A C G T A C G T A C G T A C G T

PH0081.1_Pdx1/Jaspar

Match Rank:7
Score:0.54
Offset:-5
Orientation:forward strand
Alignment:-----AAWWAGCACATACTAA
AAGGTAATTAGCTCAT-----
 A C G T A C G T A C G T A C G T A C G T C G T A C T G A C G A T C G A T C G T A C T A G A G T C C G T A A G T C C G T A A C G T C G T A T A G C A C G T C G T A C G T A
T G C A T G C A C T A G A T C G G A C T T G C A G C T A C A G T A C G T C T G A T A C G G A T C G C A T T A G C C G T A C A G T A C G T A C G T A C G T A C G T A C G T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:8
Score:0.54
Offset:3
Orientation:forward strand
Alignment:AAWWAGCACATACTAA
---AAGCACTTAA---
 C G T A C T G A C G A T C G A T C G T A C T A G A G T C C G T A A G T C C G T A A C G T C G T A T A G C A C G T C G T A C G T A
A C G T A C G T A C G T T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A A C G T A C G T A C G T

POU3F3/MA0788.1/Jaspar

Match Rank:9
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-AAWWAGCACATACTAA
AAATTAGCATAAT----
 A C G T C G T A C T G A C G A T C G A T C G T A C T A G A G T C C G T A A G T C C G T A A C G T C G T A T A G C A C G T C G T A C G T A
G C T A G C T A C G T A G A C T G C A T C G T A T C A G G T A C T G C A G C A T G C T A G C T A G C A T A C G T A C G T A C G T A C G T

PH0004.1_Nkx3-2/Jaspar

Match Rank:10
Score:0.54
Offset:0
Orientation:forward strand
Alignment:AAWWAGCACATACTAA-
CATAACCACTTAACAAC
 C G T A C T G A C G A T C G A T C G T A C T A G A G T C C G T A A G T C C G T A A C G T C G T A T A G C A C G T C G T A C G T A A C G T
T G A C G C T A C G A T T C G A G C T A T A G C A G T C C G T A G T A C A G C T A G C T G C T A C G T A T A G C T G C A G T C A G A T C