Information for 18-ARTAYTTTASAAGCAS (Motif 22)

C G T A T C A G A C G T C G T A A G C T A C G T A C G T A C G T C G T A A T G C C G T A C G T A A C T G A G T C C G T A A T G C
Reverse Opposite:
A T C G A C G T A C T G T A G C A C G T A C G T A T C G A C G T C G T A C G T A C G T A T C A G A C G T C G T A A G C T A C G T
p-value:1e-6
log p-value:-1.497e+01
Information Content per bp:1.875
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.54%
Number of Background Sequences with motif0.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets47.2 +/- 23.6bp
Average Position of motif in Background33.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.67
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXC13/MA0907.1/Jaspar

Match Rank:1
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:ARTAYTTTASAAGCAS
---NTTTTACGAGN--
 C G T A T C A G A C G T C G T A A G C T A C G T A C G T A C G T C G T A A T G C C G T A C G T A A C T G A G T C C G T A A T G C
A C G T A C G T A C G T C G A T C G A T C G A T C G A T G C A T G T C A A G T C C T A G T C G A A T C G T G A C A C G T A C G T

PH0048.1_Hoxa13/Jaspar

Match Rank:2
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:ARTAYTTTASAAGCAS-
-ANATTTTACGAGNNNN
 C G T A T C A G A C G T C G T A A G C T A C G T A C G T A C G T C G T A A T G C C G T A C G T A A C T G A G T C C G T A A T G C A C G T
A C G T G C T A T C G A C G T A C G A T C A G T C G A T C G A T C T G A A G T C C T A G C T G A A T C G T A C G C G A T G C A T C G A T

PH0068.1_Hoxc13/Jaspar

Match Rank:3
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:ARTAYTTTASAAGCAS-
-NAATTTTACGAGNTNN
 C G T A T C A G A C G T C G T A A G C T A C G T A C G T A C G T C G T A A T G C C G T A C G T A A C T G A G T C C G T A A T G C A C G T
A C G T G C T A C T G A C G T A C G A T C G A T C G A T C G A T C T G A G A T C C T A G C T G A A T C G T G A C C G A T C G A T C G A T

HOXC12/MA0906.1/Jaspar

Match Rank:4
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:ARTAYTTTASAAGCAS
---NTTTTACGACC--
 C G T A T C A G A C G T C G T A A G C T A C G T A C G T A C G T C G T A A T G C C G T A C G T A A C T G A G T C C G T A A T G C
A C G T A C G T A C G T C G A T C A G T C G A T G C A T C G A T T C G A A G T C C A T G C T G A A G T C G A T C A C G T A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:5
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:ARTAYTTTASAAGCAS
--DGWTTTATGRCN--
 C G T A T C A G A C G T C G T A A G C T A C G T A C G T A C G T C G T A A T G C C G T A C G T A A C T G A G T C C G T A A T G C
A C G T A C G T C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C A C G T A C G T

HOXC11/MA0651.1/Jaspar

Match Rank:6
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:ARTAYTTTASAAGCAS
---NTTTTACGACC--
 C G T A T C A G A C G T C G T A A G C T A C G T A C G T A C G T C G T A A T G C C G T A C G T A A C T G A G T C C G T A A T G C
A C G T A C G T A C G T C G T A C G A T C A G T C G A T G C A T C G T A A G T C C T A G C T G A A G T C G A T C A C G T A C G T

PH0112.1_Nkx2-3/Jaspar

Match Rank:7
Score:0.53
Offset:-5
Orientation:reverse strand
Alignment:-----ARTAYTTTASAAGCAS
CNTTAAGTACTTAANG-----
 A C G T A C G T A C G T A C G T A C G T C G T A T C A G A C G T C G T A A G C T A C G T A C G T A C G T C G T A A T G C C G T A C G T A A C T G A G T C C G T A A T G C
G A T C C G T A G A C T A G C T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T C G T A T C G A T C G A C T A G A C G T A C G T A C G T A C G T A C G T

PH0116.1_Nkx2-9/Jaspar

Match Rank:8
Score:0.53
Offset:-6
Orientation:reverse strand
Alignment:------ARTAYTTTASAAGCAS
NATTTAAGTACTTNAAA-----
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A T C A G A C G T C G T A A G C T A C G T A C G T A C G T C G T A A T G C C G T A C G T A A C T G A G T C C G T A A T G C
C T G A G C T A C G A T G C A T A G C T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T G C T A C G T A C T G A G C T A A C G T A C G T A C G T A C G T A C G T

Hoxa11/MA0911.1/Jaspar

Match Rank:9
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:ARTAYTTTASAAGCAS
--ANTTTTACGACC--
 C G T A T C A G A C G T C G T A A G C T A C G T A C G T A C G T C G T A A T G C C G T A C G T A A C T G A G T C C G T A A T G C
A C G T A C G T G C T A C G T A C G A T C G A T G C A T G C A T G C T A G A T C C T A G T C G A A G T C G A T C A C G T A C G T

PH0077.1_Hoxd12/Jaspar

Match Rank:10
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:ARTAYTTTASAAGCAS-
NNNATTTTACGACNNTN
 C G T A T C A G A C G T C G T A A G C T A C G T A C G T A C G T C G T A A T G C C G T A C G T A A C T G A G T C C G T A A T G C A C G T
G T C A C G T A C T A G C T G A C G A T C G A T C G A T C G A T C G T A A G T C C A T G C T G A A G T C A G T C G A C T C G A T C T A G