Information for 12-CCCATGTCTAACA (Motif 14)

A G T C A G T C A G T C C G T A A C G T T C A G A C G T A G T C A C G T C G T A C G T A A G T C C G T A
Reverse Opposite:
A C G T C T A G A C G T A C G T C G T A A C T G C G T A A G T C C G T A A C G T C T A G A C T G A C T G
p-value:1e-9
log p-value:-2.075e+01
Information Content per bp:1.939
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.72%
Number of Background Sequences with motif1.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets49.8 +/- 34.6bp
Average Position of motif in Background66.0 +/- 11.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:CCCATGTCTAACA---
----TGTCTGDCACCT
 A G T C A G T C A G T C C G T A A C G T T C A G A C G T A G T C A C G T C G T A C G T A A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:2
Score:0.60
Offset:3
Orientation:forward strand
Alignment:CCCATGTCTAACA---
---CTGTCTGTCACCT
 A G T C A G T C A G T C C G T A A C G T T C A G A C G T A G T C A C G T C G T A C G T A A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:3
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CCCATGTCTAACA--
ACCGTGACTAATTNN
 A G T C A G T C A G T C C G T A A C G T T C A G A C G T A G T C A C G T C G T A C G T A A G T C C G T A A C G T A C G T
C G T A T A G C A G T C C T A G C A G T C T A G C T G A G T A C G C A T T C G A C G T A G C A T A G C T C T A G T C G A

PB0187.1_Tcf7_2/Jaspar

Match Rank:4
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:CCCATGTCTAACA---
-NNNTTTNTAATACNG
 A G T C A G T C A G T C C G T A A C G T T C A G A C G T A G T C A C G T C G T A C G T A A G T C C G T A A C G T A C G T A C G T
A C G T C G A T C A G T C T A G C A G T C A G T C G A T T G C A A G C T G T C A C G T A C G A T C G T A G T A C T C A G C A T G

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.50
Offset:3
Orientation:forward strand
Alignment:CCCATGTCTAACA
---TWGTCTGV--
 A G T C A G T C A G T C C G T A A C G T T C A G A C G T A G T C A C G T C G T A C G T A A G T C C G T A
A C G T A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:6
Score:0.50
Offset:-1
Orientation:reverse strand
Alignment:-CCCATGTCTAACA--
TGCCAAAATAAACANN
 A C G T A G T C A G T C A G T C C G T A A C G T T C A G A C G T A G T C A C G T C G T A C G T A A G T C C G T A A C G T A C G T
C G A T A C T G T A G C G T A C C G T A C T G A C T G A C T G A G A C T G T C A G T C A C T G A A G T C C G T A C T G A G C T A

PB0119.1_Foxa2_2/Jaspar

Match Rank:7
Score:0.50
Offset:3
Orientation:forward strand
Alignment:CCCATGTCTAACA-----
---AAAAATAACAAACGG
 A G T C A G T C A G T C C G T A A C G T T C A G A C G T A G T C A C G T C G T A C G T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T C G A T C G A C G T A C G T A G T C A A C G T C T G A C G T A G A T C G T C A G C T A C T G A T A G C T A C G A T C G

Twist2/MA0633.1/Jaspar

Match Rank:8
Score:0.49
Offset:0
Orientation:forward strand
Alignment:CCCATGTCTAACA
ACCATATGTT---
 A G T C A G T C A G T C C G T A A C G T T C A G A C G T A G T C A C G T C G T A C G T A A G T C C G T A
C T G A G T A C A G T C C G T A A G C T C T G A A C G T A C T G A C G T A C G T A C G T A C G T A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.49
Offset:2
Orientation:forward strand
Alignment:CCCATGTCTAACA-
--NCTGTCAATCAN
 A G T C A G T C A G T C C G T A A C G T T C A G A C G T A G T C A C G T C G T A C G T A A G T C C G T A A C G T
A C G T A C G T T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A

FOS/MA0476.1/Jaspar

Match Rank:10
Score:0.48
Offset:2
Orientation:reverse strand
Alignment:CCCATGTCTAACA
--NATGAGTCANN
 A G T C A G T C A G T C C G T A A C G T T C A G A C G T A G T C A C G T C G T A C G T A A G T C C G T A
A C G T A C G T T C G A T C G A A C G T A C T G C G T A T A C G A C G T G T A C C G T A A T G C G T C A