Information for 6-CAAACTTCGC (Motif 47)

A G T C C G T A C G T A C G T A A G T C A C G T A C G T A G T C A C T G A G T C
Reverse Opposite:
A C T G A G T C A C T G C G T A C G T A A C T G A C G T A C G T A C G T A C T G
p-value:1e-5
log p-value:-1.217e+01
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.39%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets36.7 +/- 23.2bp
Average Position of motif in Background57.5 +/- 1.8bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0161.1_Rxra_2/Jaspar

Match Rank:1
Score:0.71
Offset:-4
Orientation:reverse strand
Alignment:----CAAACTTCGC--
NNNNCAACCTTCGNGA
 A C G T A C G T A C G T A C G T A G T C C G T A C G T A C G T A A G T C A C G T A C G T A G T C A C T G A G T C A C G T A C G T
G T C A C A T G G C A T C T G A A G T C T C G A T G C A T G A C G A T C C G A T C G A T A G T C C A T G A G T C A C T G G T C A

Nr2e3/MA0164.1/Jaspar

Match Rank:2
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CAAACTTCGC
CAAGCTT---
 A G T C C G T A C G T A C G T A A G T C A C G T A C G T A G T C A C T G A G T C
G A T C C G T A C G T A A T C G A G T C A C G T A C G T A C G T A C G T A C G T

POL008.1_DCE_S_I/Jaspar

Match Rank:3
Score:0.59
Offset:3
Orientation:forward strand
Alignment:CAAACTTCGC
---GCTTCC-
 A G T C C G T A C G T A C G T A A G T C A C G T A C G T A G T C A C T G A G T C
A C G T A C G T A C G T A C T G A T G C A G C T A C G T A T G C A T G C A C G T

PB0058.1_Sfpi1_1/Jaspar

Match Rank:4
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:CAAACTTCGC-----
-NNACTTCCTCTTNN
 A G T C C G T A C G T A C G T A A G T C A C G T A C G T A G T C A C T G A G T C A C G T A C G T A C G T A C G T A C G T
A C G T C A G T G C T A C T G A A T G C C G A T C G A T A G T C A G T C A C G T A G T C G C A T G C A T G C T A T C G A

HNF4G/MA0484.1/Jaspar

Match Rank:5
Score:0.54
Offset:-6
Orientation:forward strand
Alignment:------CAAACTTCGC
AGAGTCCAAAGTCCA-
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A C G T A C G T A A G T C A C G T A C G T A G T C A C T G A G T C
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A A C G T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:6
Score:0.53
Offset:-7
Orientation:forward strand
Alignment:-------CAAACTTCGC
CANAGNNCAAAGTCCA-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A C G T A C G T A A G T C A C G T A C G T A G T C A C T G A G T C
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A A C G T

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:7
Score:0.52
Offset:0
Orientation:forward strand
Alignment:CAAACTTCGC
AAATCACTGC
 A G T C C G T A C G T A C G T A A G T C A C G T A C G T A G T C A C T G A G T C
T G C A C G T A G T C A A G C T A G T C G C T A T A G C C G A T C T A G G A T C

HLTF/MA0109.1/Jaspar

Match Rank:8
Score:0.51
Offset:1
Orientation:forward strand
Alignment:CAAACTTCGC-
-AACCTTATAT
 A G T C C G T A C G T A C G T A A G T C A C G T A C G T A G T C A C T G A G T C A C G T
A C G T C G T A G C T A G T A C A G T C C G A T A C G T C G T A A C G T T C G A G A C T

ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer

Match Rank:9
Score:0.50
Offset:3
Orientation:reverse strand
Alignment:CAAACTTCGC---
---ACTTCCTBGT
 A G T C C G T A C G T A C G T A A G T C A C G T A C G T A G T C A C T G A G T C A C G T A C G T A C G T
A C G T A C G T A C G T T C G A A G T C A G C T C G A T A G T C A T G C A C G T A T G C T C A G C G A T

NFIA/MA0670.1/Jaspar

Match Rank:10
Score:0.50
Offset:3
Orientation:reverse strand
Alignment:CAAACTTCGC---
---NNTTGGCANN
 A G T C C G T A C G T A C G T A A G T C A C G T A C G T A G T C A C T G A G T C A C G T A C G T A C G T
A C G T A C G T A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C