Information for 6-GGCAGTCTGTCTG (Motif 9)

C T A G C T A G T A G C C G T A A C T G C G A T A G T C C G A T A C T G A C G T A G T C A C G T A C T G
Reverse Opposite:
G T A C C G T A T A C G T G C A A G T C C G T A A C T G C G T A A G T C C G A T A C T G G A T C A G T C
p-value:1e-19
log p-value:-4.434e+01
Information Content per bp:1.772
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.56%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets48.4 +/- 30.6bp
Average Position of motif in Background11.3 +/- 5.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.69
Offset:6
Orientation:forward strand
Alignment:GGCAGTCTGTCTG-
------CTGTCTGG
 C T A G C T A G T A G C C G T A A C T G C G A T A G T C C G A T A C T G A C G T A G T C A C G T A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.67
Offset:4
Orientation:forward strand
Alignment:GGCAGTCTGTCTG-
----VBSYGTCTGG
 C T A G C T A G T A G C C G T A A C T G C G A T A G T C C G A T A C T G A C G T A G T C A C G T A C T G A C G T
A C G T A C G T A C G T A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:3
Score:0.64
Offset:6
Orientation:forward strand
Alignment:GGCAGTCTGTCTG-
------TWGTCTGV
 C T A G C T A G T A G C C G T A A C T G C G A T A G T C C G A T A C T G A C G T A G T C A C G T A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:4
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GGCAGTCTGTCTG
TGGCAGNCTGCCAG
 A C G T C T A G C T A G T A G C C G T A A C T G C G A T A G T C C G A T A C T G A C G T A G T C A C G T A C T G
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G

PB0060.1_Smad3_1/Jaspar

Match Rank:5
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:GGCAGTCTGTCTG------
--NNTNNTGTCTGGNNTNG
 C T A G C T A G T A G C C G T A A C T G C G A T A G T C C G A T A C T G A C G T A G T C A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:6
Score:0.56
Offset:6
Orientation:forward strand
Alignment:GGCAGTCTGTCTG------
------CTGTCTGTCACCT
 C T A G C T A G T A G C C G T A A C T G C G A T A G T C C G A T A C T G A C G T A G T C A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

PB0149.1_Myb_2/Jaspar

Match Rank:7
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----GGCAGTCTGTCTG
NNNTGGCAGTTGGTNN-
 A C G T A C G T A C G T A C G T C T A G C T A G T A G C C G T A A C T G C G A T A G T C C G A T A C T G A C G T A G T C A C G T A C T G
C T A G T A G C T C G A G A C T C T A G C T A G A G T C C T G A A C T G A C G T G A C T C T A G T C A G C A G T G T A C T A C G A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:GGCAGTCTGTCTG--
---TGTCTGDCACCT
 C T A G C T A G T A G C C G T A A C T G C G A T A G T C C G A T A C T G A C G T A G T C A C G T A C T G A C G T A C G T
A C G T A C G T A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

PB0151.1_Myf6_2/Jaspar

Match Rank:9
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-GGCAGTCTGTCTG-
GGNGCGNCTGTTNNN
 A C G T C T A G C T A G T A G C C G T A A C T G C G A T A G T C C G A T A C T G A C G T A G T C A C G T A C T G A C G T
C T A G A C T G G A C T A T C G A T G C A T C G A C T G G A T C A G C T C T A G A C G T A G C T A C T G A T G C A G C T

POL009.1_DCE_S_II/Jaspar

Match Rank:10
Score:0.54
Offset:5
Orientation:forward strand
Alignment:GGCAGTCTGTCTG
-----GCTGTG--
 C T A G C T A G T A G C C G T A A C T G C G A T A G T C C G A T A C T G A C G T A G T C A C G T A C T G
A C G T A C G T A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T