Information for 25-GCAACCCGAC (Motif 30)

A C T G A G T C C G T A C G T A A G T C A G T C A G T C A C T G C G T A A G T C
Reverse Opposite:
A C T G A C G T A G T C A C T G A C T G A C T G A C G T A C G T A C T G A G T C
p-value:1e-5
log p-value:-1.269e+01
Information Content per bp:1.530
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.72%
Number of Background Sequences with motif2.1
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets73.2 +/- 27.0bp
Average Position of motif in Background55.8 +/- 20.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:1
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GCAACCCGAC--
GWAAYHTGAKMC
 A C T G A G T C C G T A C G T A A G T C A G T C A G T C A C T G C G T A A G T C A C G T A C G T
C T A G C G T A G T C A C G T A A G T C G A T C A G C T C T A G C G T A A C G T G T C A G A T C

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:2
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GCAACCCGAC--
GWAAYHTGABMC
 A C T G A G T C C G T A C G T A A G T C A G T C A G T C A C T G C G T A A G T C A C G T A C G T
A C T G C G A T G T C A C G T A A G T C G T A C G C A T A C T G C G T A A C G T G T A C G A T C

PB0060.1_Smad3_1/Jaspar

Match Rank:3
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GCAACCCGAC------
CAAATCCAGACATCACA
 A C G T A C T G A G T C C G T A C G T A A G T C A G T C A G T C A C T G C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:4
Score:0.56
Offset:-7
Orientation:forward strand
Alignment:-------GCAACCCGAC
CCGCATAGCAACGGA--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C C G T A C G T A A G T C A G T C A G T C A C T G C G T A A G T C
A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:GCAACCCGAC--
----CCAGACAG
 A C T G A G T C C G T A C G T A A G T C A G T C A G T C A C T G C G T A A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

PB0055.1_Rfx4_1/Jaspar

Match Rank:6
Score:0.55
Offset:-7
Orientation:forward strand
Alignment:-------GCAACCCGAC
TACCATAGCAACGGT--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C C G T A C G T A A G T C A G T C A G T C A C T G C G T A A G T C
A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T A C G T A C G T

PB0147.1_Max_2/Jaspar

Match Rank:7
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--GCAACCCGAC--
GTGCCACGCGACTG
 A C G T A C G T A C T G A G T C C G T A C G T A A G T C A G T C A G T C A C T G C G T A A G T C A C G T A C G T
A C T G A G C T A C T G G A T C A G T C C G T A A G T C T C A G G A T C A C T G T C G A T G A C C A G T C A T G

PB0054.1_Rfx3_1/Jaspar

Match Rank:8
Score:0.55
Offset:-11
Orientation:forward strand
Alignment:-----------GCAACCCGAC--
TGTGACCCTTAGCAACCGATTAA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C C G T A C G T A A G T C A G T C A G T C A C T G C G T A A G T C A C G T A C G T
G A C T C A T G A G C T A T C G G T C A G A T C T G A C A T G C G A C T A G C T T C G A C T A G G A T C C T G A C G T A A G T C T A G C T C A G C G T A G C A T G C A T G C T A G C T A

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----GCAACCCGAC
SCCTAGCAACAG---
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C C G T A C G T A A G T C A G T C A G T C A C T G C G T A A G T C
A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G A C G T A C G T A C G T

Ddit3::Cebpa/MA0019.1/Jaspar

Match Rank:10
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----GCAACCCGAC
AGATGCAATCCC--
 A C G T A C G T A C G T A C G T A C T G A G T C C G T A C G T A A G T C A G T C A G T C A C T G C G T A A G T C
T C G A C T A G C T G A A G C T A C T G G T A C G T C A T G C A A G C T T G A C T A G C A G T C A C G T A C G T