Information for 8-GTTTCCATCACAA (Motif 11)

A C T G C G A T A G C T A C G T A G T C A G T C C G T A A C G T A T G C C G T A A G T C G T C A C T G A
Reverse Opposite:
A G C T A C G T A C T G C G A T T A C G G T C A A C G T C T A G C T A G G T C A C T G A C G T A A G T C
p-value:1e-15
log p-value:-3.595e+01
Information Content per bp:1.808
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.32%
Number of Background Sequences with motif0.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets44.3 +/- 21.4bp
Average Position of motif in Background77.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-GTTTCCATCACAA
GGTTGCCATGGCAA
 A C G T A C T G C G A T A G C T A C G T A G T C A G T C C G T A A C G T A T G C C G T A A G T C G T C A C T G A
C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-GTTTCCATCACAA
NGTTGCCATGGCAA
 A C G T A C T G C G A T A G C T A C G T A G T C A G T C C G T A A C G T A T G C C G T A A G T C G T C A C T G A
A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

RFX2/MA0600.2/Jaspar

Match Rank:3
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-GTTTCCATCACAA--
CGTTGCCATGGCAACG
 A C G T A C T G C G A T A G C T A C G T A G T C A G T C C G T A A C G T A T G C C G T A A G T C G T C A C T G A A C G T A C G T
A T G C T C A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A G A T C T A C G

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:4
Score:0.69
Offset:0
Orientation:forward strand
Alignment:GTTTCCATCACAA--
GTTGCCATGGCAACM
 A C T G C G A T A G C T A C G T A G T C A G T C C G T A A C G T A T G C C G T A A G T C G T C A C T G A A C G T A C G T
C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C T G A C

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:5
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:GTTTCCATCACAA--
ATTTGCATAACAAAG
 A C T G C G A T A G C T A C G T A G T C A G T C C G T A A C G T A T G C C G T A A G T C G T C A C T G A A C G T A C G T
G T C A G A C T G A C T G C A T T C A G T G A C G C T A C G A T C T G A G C T A A T G C G T C A T C G A C G T A T C A G

RFX3/MA0798.1/Jaspar

Match Rank:6
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-GTTTCCATCACAA--
CGTTGCCATGGCAACG
 A C G T A C T G C G A T A G C T A C G T A G T C A G T C C G T A A C G T A T G C C G T A A G T C G T C A C T G A A C G T A C G T
A T G C C T A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A T C G A G A T C T A C G

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:7
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--GTTTCCATCACAA-
CGGTTGCCATGGCAAC
 A C G T A C G T A C T G C G A T A G C T A C G T A G T C A G T C C G T A A C G T A T G C C G T A A G T C G T C A C T G A A C G T
A G T C A T C G C T A G A G C T G A C T C T A G A G T C A G T C G C T A C A G T T C A G T C A G G A T C C T G A T C G A G A T C

RFX5/MA0510.2/Jaspar

Match Rank:8
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-GTTTCCATCACAA--
CGTTGCCATGGCAACG
 A C G T A C T G C G A T A G C T A C G T A G T C A G T C C G T A A C G T A T G C C G T A A G T C G T C A C T G A A C G T A C G T
A T G C C T A G A G C T G A C T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C T G A T G C A G A T C T A C G

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:9
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-GTTTCCATCACAA
ATTTTCCATT----
 A C G T A C T G C G A T A G C T A C G T A G T C A G T C C G T A A C G T A T G C C G T A A G T C G T C A C T G A
C G T A A C G T A C G T A C G T A C G T A G T C A G T C C T G A A G C T A G C T A C G T A C G T A C G T A C G T

RFX4/MA0799.1/Jaspar

Match Rank:10
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-GTTTCCATCACAA--
CGTTGCCATGGCAACG
 A C G T A C T G C G A T A G C T A C G T A G T C A G T C C G T A A C G T A T G C C G T A A G T C G T C A C T G A A C G T A C G T
A T G C C T A G G C A T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A T C G A G A T C T A C G