Information for 16-GCATGCTTGCTAT (Motif 15)

A C T G A G T C G T C A A C G T A T C G A G T C A G C T C A G T A C T G A G T C A G C T C G T A A C G T
Reverse Opposite:
G T C A C G A T C T G A A C T G A G T C G T C A C T G A C T A G A T G C C G T A A C G T A C T G A G T C
p-value:1e-9
log p-value:-2.084e+01
Information Content per bp:1.916
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.86%
Number of Background Sequences with motif10.9
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets69.7 +/- 16.1bp
Average Position of motif in Background37.3 +/- 17.0bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0055.1_Rfx4_1/Jaspar

Match Rank:1
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:GCATGCTTGCTAT----
--NNCGTTGCTATGGNN
 A C T G A G T C G T C A A C G T A T C G A G T C A G C T C A G T A C T G A G T C A G C T C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:2
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:GCATGCTTGCTAT----
--NCCGTTGCTANGNGN
 A C T G A G T C G T C A A C G T A T C G A G T C A G C T C A G T A C T G A G T C A G C T C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G A C T A G T C A T G C C T A G A C G T G A C T C T A G G A T C A G C T C T G A C A G T T A C G A T G C T C A G T C A G

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:3
Score:0.54
Offset:-5
Orientation:forward strand
Alignment:-----GCATGCTTGCTAT
GTCATGCHTGRCTGS---
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C G T C A A C G T A T C G A G T C A G C T C A G T A C T G A G T C A G C T C G T A A C G T
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C A C G T A C G T A C G T

PB0054.1_Rfx3_1/Jaspar

Match Rank:4
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--GCATGCTTGCTAT--------
NTNNNNNGTTGCTANGGNNCANA
 A C G T A C G T A C T G A G T C G T C A A C G T A T C G A G T C A G C T C A G T A C T G A G T C A G C T C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C G A T C G A T C G T A C G T A G C A T A G T C A T C G C T A G A C G T G A C T C T A G A G T C A G C T C T G A C T G A T A C G A C T G C T A G C A G T T A G C T C G A G T A C C T G A

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:5
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:GCATGCTTGCTAT
--TTGCGTGCVA-
 A C T G A G T C G T C A A C G T A T C G A G T C A G C T C A G T A C T G A G T C A G C T C G T A A C G T
A C G T A C G T A C G T C A G T A C T G A G T C T C A G C G A T C A T G G T A C T A G C C G T A A C G T

Nr2e3/MA0164.1/Jaspar

Match Rank:6
Score:0.52
Offset:1
Orientation:forward strand
Alignment:GCATGCTTGCTAT
-CAAGCTT-----
 A C T G A G T C G T C A A C G T A T C G A G T C A G C T C A G T A C T G A G T C A G C T C G T A A C G T
A C G T G A T C C G T A C G T A A T C G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Dux/MA0611.1/Jaspar

Match Rank:7
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:GCATGCTTGCTAT
--TTGATTGN---
 A C T G A G T C G T C A A C G T A T C G A G T C A G C T C A G T A C T G A G T C A G C T C G T A A C G T
A C G T A C G T G A C T A C G T A C T G C G T A A C G T A C G T C T A G A T C G A C G T A C G T A C G T

BCL6B/MA0731.1/Jaspar

Match Rank:8
Score:0.51
Offset:3
Orientation:forward strand
Alignment:GCATGCTTGCTAT-------
---TGCTTTCTAGGAATTCA
 A C T G A G T C G T C A A C G T A T C G A G T C A G C T C A G T A C T G A G T C A G C T C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A G C T C T A G A G T C A C G T A C G T A C G T A G T C A C G T C G T A A C T G A C T G C T G A C G T A A G C T A G C T T G A C T G C A

PB0119.1_Foxa2_2/Jaspar

Match Rank:9
Score:0.50
Offset:2
Orientation:reverse strand
Alignment:GCATGCTTGCTAT----
--NCNTTTGTTATTTNN
 A C T G A G T C G T C A A C G T A T C G A G T C A G C T C A G T A C T G A G T C A G C T C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A T G C A T G C A T C G A G C T C A G T C A G T C T A G G C A T G A C T T C G A C A G T G A C T G C A T A G C T A G C T

FOXP3/MA0850.1/Jaspar

Match Rank:10
Score:0.50
Offset:3
Orientation:reverse strand
Alignment:GCATGCTTGCTAT
---TGTTTAC---
 A C T G A G T C G T C A A C G T A T C G A G T C A G C T C A G T A C T G A G T C A G C T C G T A A C G T
A C G T A C G T A C G T A G C T T C A G A G C T G A C T C G A T C T G A A G T C A C G T A C G T A C G T