Information for 9-CCCTGTGDGCTCACAG (Motif 13)

A G T C A G T C A G T C A G C T C T A G C G A T A T C G C T A G A C T G A T G C A G C T A G T C C T G A A G T C C G T A C T A G
Reverse Opposite:
A G T C C G A T A C T G A G C T A C T G C T G A T A C G A G T C G A T C A T G C C G T A A G T C C T G A A C T G A C T G A C T G
p-value:1e-10
log p-value:-2.486e+01
Information Content per bp:1.811
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.58%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets62.7 +/- 16.1bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GLI2/MA0734.1/Jaspar

Match Rank:1
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:CCCTGTGDGCTCACAG
--CAGTGTGGTCGC--
 A G T C A G T C A G T C A G C T C T A G C G A T A T C G C T A G A C T G A T G C A G C T A G T C C T G A A G T C C G T A C T A G
A C G T A C G T G A T C G C T A C A T G A C G T A T C G C A G T T A C G C T A G A C G T G T A C A C T G G A T C A C G T A C G T

TFAP2A(var.3)/MA0872.1/Jaspar

Match Rank:2
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--CCCTGTGDGCTCACAG
TGCCCTGAGGGCA-----
 A C G T A C G T A G T C A G T C A G T C A G C T C T A G C G A T A T C G C T A G A C T G A T G C A G C T A G T C C T G A A G T C C G T A C T A G
G C A T A T C G A G T C A G T C A G T C A G C T A T C G T C G A T C A G A C T G A C T G A T G C C G T A A C G T A C G T A C G T A C G T A C G T

TFAP2C(var.3)/MA0815.1/Jaspar

Match Rank:3
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--CCCTGTGDGCTCACAG
TGCCCTNAGGGCA-----
 A C G T A C G T A G T C A G T C A G T C A G C T C T A G C G A T A T C G C T A G A C T G A T G C A G C T A G T C C T G A A G T C C G T A C T A G
G C A T A T C G A G T C A G T C A G T C A G C T T A G C T C G A T C A G A C T G A C T G A T G C C G T A A C G T A C G T A C G T A C G T A C G T

TFAP2B(var.3)/MA0813.1/Jaspar

Match Rank:4
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--CCCTGTGDGCTCACAG
TGCCCTGAGGGCA-----
 A C G T A C G T A G T C A G T C A G T C A G C T C T A G C G A T A T C G C T A G A C T G A T G C A G C T A G T C C T G A A G T C C G T A C T A G
G C A T A T C G A G T C A G T C A G T C A G C T A C T G T C G A T C A G A C T G A C T G A T G C C G T A A C G T A C G T A C G T A C G T A C G T

PB0128.1_Gcm1_2/Jaspar

Match Rank:5
Score:0.53
Offset:-6
Orientation:reverse strand
Alignment:------CCCTGTGDGCTCACAG
NTCNTCCCCTATNNGNN-----
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C A G T C A G C T C T A G C G A T A T C G C T A G A C T G A T G C A G C T A G T C C T G A A G T C C G T A C T A G
T G A C C A G T A G T C T A G C A G C T A G T C T A G C G T A C G T A C A G C T C T G A A G C T C A T G A T G C T A C G G T A C G C T A A C G T A C G T A C G T A C G T A C G T

PB0057.1_Rxra_1/Jaspar

Match Rank:6
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:CCCTGTGDGCTCACAG--
-NTNNNGGGGTCANGNNN
 A G T C A G T C A G T C A G C T C T A G C G A T A T C G C T A G A C T G A T G C A G C T A G T C C T G A A G T C C G T A C T A G A C G T A C G T
A C G T T C G A C A G T A G C T C T G A G C T A T C A G C T A G A C T G A C T G A C G T A G T C C T G A G T A C T C A G C G T A T A G C G C T A

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:7
Score:0.50
Offset:5
Orientation:forward strand
Alignment:CCCTGTGDGCTCACAG
-----TRAGGTCA---
 A G T C A G T C A G T C A G C T C T A G C G A T A T C G C T A G A C T G A T G C A G C T A G T C C T G A A G T C C G T A C T A G
A C G T A C G T A C G T A C G T A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T

PLAG1/MA0163.1/Jaspar

Match Rank:8
Score:0.50
Offset:0
Orientation:reverse strand
Alignment:CCCTGTGDGCTCACAG
CCCCCTTGGGCCCC--
 A G T C A G T C A G T C A G C T C T A G C G A T A T C G C T A G A C T G A T G C A G C T A G T C C T G A A G T C C G T A C T A G
A G T C G T A C A G T C A G T C G A T C A C G T C G A T C A T G T C A G A T C G G T A C A G T C G A T C A G T C A C G T A C G T

PB0153.1_Nr2f2_2/Jaspar

Match Rank:9
Score:0.50
Offset:1
Orientation:forward strand
Alignment:CCCTGTGDGCTCACAG-
-CGCGCCGGGTCACGTA
 A G T C A G T C A G T C A G C T C T A G C G A T A T C G C T A G A C T G A T G C A G C T A G T C C T G A A G T C C G T A C T A G A C G T
A C G T T A G C A C T G T G A C A C T G A G T C A T G C C T A G A C T G A C T G A C G T A G T C C T G A T A G C A C T G A G C T G C T A

CRE(bZIP)/Promoter/Homer

Match Rank:10
Score:0.50
Offset:2
Orientation:forward strand
Alignment:CCCTGTGDGCTCACAG
--CGGTGACGTCAC--
 A G T C A G T C A G T C A G C T C T A G C G A T A T C G C T A G A C T G A T G C A G C T A G T C C T G A A G T C C G T A C T A G
A C G T A C G T A T G C A T C G T A C G A G C T A T C G C T G A A G T C C T A G A G C T A T G C C T G A A T G C A C G T A C G T