Information for 2-VAMCAGCTGG (Motif 2)

T C G A G C T A T G A C A T G C G T C A A C T G T G A C G C A T C A T G A C T G
Reverse Opposite:
T G A C G T A C C G T A A C T G T G A C C A G T T A C G A C T G C G A T A G C T
p-value:1e-33
log p-value:-7.744e+01
Information Content per bp:1.590
Number of Target Sequences with motif234.0
Percentage of Target Sequences with motif29.36%
Number of Background Sequences with motif6140.4
Percentage of Background Sequences with motif12.91%
Average Position of motif in Targets53.9 +/- 25.7bp
Average Position of motif in Background49.9 +/- 31.4bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.18
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer

Match Rank:1
Score:0.95
Offset:0
Orientation:reverse strand
Alignment:VAMCAGCTGG
NNVCAGCTGB
 T C G A G C T A T G A C A T G C G T C A A C T G T G A C G C A T C A T G A C T G
C A T G T C A G T G A C G T A C G T C A T A C G T A G C G C A T T A C G A C T G

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:2
Score:0.94
Offset:1
Orientation:reverse strand
Alignment:VAMCAGCTGG---
-NVCAGCTGBBNN
 T C G A G C T A T G A C A T G C G T C A A C T G T G A C G C A T C A T G A C T G A C G T A C G T A C G T
A C G T T C G A T A C G G T A C C G T A A T C G T G A C C G A T A C T G A T G C A T G C T C A G G A T C

Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer

Match Rank:3
Score:0.94
Offset:0
Orientation:reverse strand
Alignment:VAMCAGCTGG
NAACAGCTGT
 T C G A G C T A T G A C A T G C G T C A A C T G T G A C G C A T C A T G A C T G
T C A G T G C A T C G A A G T C C G T A A T C G T A G C A C G T A C T G A G C T

Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer

Match Rank:4
Score:0.94
Offset:-1
Orientation:forward strand
Alignment:-VAMCAGCTGG-
VNAVCAGCTGGC
 A C G T T C G A G C T A T G A C A T G C G T C A A C T G T G A C G C A T C A T G A C T G A C G T
T C A G A C G T T C G A T A G C A G T C C G T A A C T G G T A C A C G T A C T G A T C G A G T C

Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer

Match Rank:5
Score:0.92
Offset:0
Orientation:forward strand
Alignment:VAMCAGCTGG
NAACAGCTGG
 T C G A G C T A T G A C A T G C G T C A A C T G T G A C G C A T C A T G A C T G
C G A T T G C A T G C A G A T C C G T A A C T G T G A C G A C T C A T G A C T G

E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer

Match Rank:6
Score:0.92
Offset:0
Orientation:forward strand
Alignment:VAMCAGCTGG
NNACAGCTGC
 T C G A G C T A T G A C A T G C G T C A A C T G T G A C G C A T C A T G A C T G
C G T A T G A C T C G A A G T C C G T A A T C G A T G C A C G T A C T G A G T C

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:7
Score:0.92
Offset:1
Orientation:forward strand
Alignment:VAMCAGCTGG
-ANCAGCTG-
 T C G A G C T A T G A C A T G C G T C A A C T G T G A C G C A T C A T G A C T G
A C G T C T G A T C A G G T A C G C T A A C T G T G A C G C A T C A T G A C G T

Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer

Match Rank:8
Score:0.92
Offset:0
Orientation:forward strand
Alignment:VAMCAGCTGG
NAHCAGCTGD
 T C G A G C T A T G A C A T G C G T C A A C T G T G A C G C A T C A T G A C T G
G T C A T G C A G C T A A G T C C G T A A C T G T G A C G C A T T C A G C A G T

Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer

Match Rank:9
Score:0.92
Offset:1
Orientation:reverse strand
Alignment:VAMCAGCTGG-
-AACAKATGGY
 T C G A G C T A T G A C A T G C G T C A A C T G T G A C G C A T C A T G A C T G A C G T
A C G T C T G A T G C A A G T C T C G A A C T G T G C A G C A T A C T G A C T G G A C T

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.91
Offset:0
Orientation:reverse strand
Alignment:VAMCAGCTGG
CAGCAGCTGN
 T C G A G C T A T G A C A T G C G T C A A C T G T G A C G C A T C A T G A C T G
T G A C T C G A T C A G A G T C C G T A A T C G A T G C A C G T A C T G A G C T