Information for 5-GAWTATWMAKTRCARA (Motif 19)

A C T G G T C A C G T A A C G T C G T A A G C T C G T A T G A C C G T A A C G T A G C T C T G A A G T C C G T A C T A G C G T A
Reverse Opposite:
A C G T A G T C A C G T A C T G A G C T C T G A T G A C A C G T A C G T C G A T C T G A A C G T C G T A C G A T A C G T A G T C
p-value:1e-6
log p-value:-1.407e+01
Information Content per bp:1.827
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.38%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets51.7 +/- 27.2bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:GAWTATWMAKTRCARA
GAATATTCAT------
 A C T G G T C A C G T A A C G T C G T A A G C T C G T A T G A C C G T A A C G T A G C T C T G A A G T C C G T A C T A G C G T A
T C A G G T C A C G T A A G C T C G T A G A C T C A G T A T G C T C G A C G A T A C G T A C G T A C G T A C G T A C G T A C G T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:2
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GAWTATWMAKTRCARA
GHATATKCAT------
 A C T G G T C A C G T A A C G T C G T A A G C T C G T A T G A C C G T A A C G T A G C T C T G A A G T C C G T A C T A G C G T A
C T A G G T A C C G T A G A C T C T G A C G A T C A T G G A T C C G T A C G A T A C G T A C G T A C G T A C G T A C G T A C G T

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:3
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--GAWTATWMAKTRCARA
ATGAATATTCATGAG---
 A C G T A C G T A C T G G T C A C G T A A C G T C G T A A G C T C G T A T G A C C G T A A C G T A G C T C T G A A G T C C G T A C T A G C G T A
G C T A A C G T C T A G G T C A C G T A A C G T C G T A C G A T C A G T A G T C C G T A A C G T C T A G C T G A A T C G A C G T A C G T A C G T

PH0063.1_Hoxb8/Jaspar

Match Rank:4
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GAWTATWMAKTRCARA-
-TTTATTAATTGCNNGN
 A C T G G T C A C G T A A C G T C G T A A G C T C G T A T G A C C G T A A C G T A G C T C T G A A G T C C G T A C T A G C G T A A C G T
A C G T G C A T G A C T A C G T C T G A C G A T G C A T C G T A C G T A A C G T C A G T C T A G G A T C G T A C T C A G A T C G C G A T

PH0038.1_Hlx/Jaspar

Match Rank:5
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-GAWTATWMAKTRCARA
CCATAATTAATTACA--
 A C G T A C T G G T C A C G T A A C G T C G T A A G C T C G T A T G A C C G T A A C G T A G C T C T G A A G T C C G T A C T A G C G T A
G T A C G T A C G T C A G A C T G C T A C G T A G A C T G C A T C T G A C T G A G C A T C G A T C T G A G A T C G T C A A C G T A C G T

OTX1/MA0711.1/Jaspar

Match Rank:6
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--GAWTATWMAKTRCARA
CGGATTAN----------
 A C G T A C G T A C T G G T C A C G T A A C G T C G T A A G C T C G T A T G A C C G T A A C G T A G C T C T G A A G T C C G T A C T A G C G T A
T A G C T A C G A T C G G T C A A C G T G C A T C G T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0185.1_Tcf1_2/Jaspar

Match Rank:7
Score:0.51
Offset:-7
Orientation:forward strand
Alignment:-------GAWTATWMAKTRCARA
TTGCCCGGATTAGG---------
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G G T C A C G T A A C G T C G T A A G C T C G T A T G A C C G T A A C G T A G C T C T G A A G T C C G T A C T A G C G T A
C G A T A C G T T C A G G A T C T A G C A G T C T A C G A C T G C T G A C A G T A C G T C G T A C A T G C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0118.1_Nkx6-1_1/Jaspar

Match Rank:8
Score:0.51
Offset:0
Orientation:forward strand
Alignment:GAWTATWMAKTRCARA-
GAAAATTAATTACTTCG
 A C T G G T C A C G T A A C G T C G T A A G C T C G T A T G A C C G T A A C G T A G C T C T G A A G T C C G T A C T A G C G T A A C G T
C T A G T G C A G C T A C G T A C G T A C G A T A G C T C G T A C G T A C G A T A C G T C T G A G T A C G A C T A G C T A G T C A T C G

OTX2/MA0712.1/Jaspar

Match Rank:9
Score:0.51
Offset:-2
Orientation:reverse strand
Alignment:--GAWTATWMAKTRCARA
NGGATTAA----------
 A C G T A C G T A C T G G T C A C G T A A C G T C G T A A G C T C G T A T G A C C G T A A C G T A G C T C T G A A G T C C G T A C T A G C G T A
T G C A T C A G C T A G G T C A A C G T G C A T C G T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0120.1_Nkx6-3/Jaspar

Match Rank:10
Score:0.51
Offset:0
Orientation:forward strand
Alignment:GAWTATWMAKTRCARA-
GAAAATTAATTACTTTG
 A C T G G T C A C G T A A C G T C G T A A G C T C G T A T G A C C G T A A C G T A G C T C T G A A G T C C G T A C T A G C G T A A C G T
C T A G T G C A G C A T C G T A G C T A C G A T G A C T C G T A C G T A C G A T A C G T C T G A T G A C A G C T A C G T A G C T A C T G