| Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
SVG |
| 1 |
| bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer | 1e-5 | -1.223e+01 | 0.0018 | 41.0 | 5.97% | 1143.2 | 2.75% | motif file (matrix) |
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| 2 |
| HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer | 1e-4 | -1.115e+01 | 0.0026 | 96.0 | 13.97% | 3752.6 | 9.02% | motif file (matrix) |
svg |
| 3 |
| c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer | 1e-4 | -1.081e+01 | 0.0026 | 52.0 | 7.57% | 1694.3 | 4.07% | motif file (matrix) |
svg |
| 4 |
| CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer | 1e-4 | -1.050e+01 | 0.0026 | 58.0 | 8.44% | 1987.8 | 4.78% | motif file (matrix) |
svg |
| 5 |
| NRF(NRF)/Promoter/Homer | 1e-2 | -6.565e+00 | 0.1026 | 19.0 | 2.77% | 522.0 | 1.26% | motif file (matrix) |
svg |
| 6 |
| USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer | 1e-2 | -6.414e+00 | 0.1026 | 43.0 | 6.26% | 1607.4 | 3.86% | motif file (matrix) |
svg |
| 7 |
| Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer | 1e-2 | -6.062e+00 | 0.1212 | 60.0 | 8.73% | 2480.5 | 5.96% | motif file (matrix) |
svg |
| 8 |
| NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer | 1e-2 | -5.649e+00 | 0.1602 | 86.0 | 12.52% | 3883.5 | 9.34% | motif file (matrix) |
svg |
| 9 |
| BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer | 1e-2 | -5.341e+00 | 0.1937 | 134.0 | 19.51% | 6547.2 | 15.74% | motif file (matrix) |
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| 10 |
| NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer | 1e-2 | -5.157e+00 | 0.2095 | 115.0 | 16.74% | 5532.3 | 13.30% | motif file (matrix) |
svg |
| 11 |
| HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer | 1e-2 | -4.853e+00 | 0.2582 | 25.0 | 3.64% | 886.2 | 2.13% | motif file (matrix) |
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