Information for 24-TGTCAGACATGTGTCA (Motif 46)

A C G T A C T G A G C T A G T C C G T A A C T G C G T A A G T C C G T A G A C T A T C G A C G T A C T G A G C T A T G C C G T A
Reverse Opposite:
A C G T A T C G C T G A A G T C G T C A A T G C C T G A A C G T A C T G C G A T T G A C C G A T C T A G C T G A A G T C C G T A
p-value:1e-2
log p-value:-5.383e+00
Information Content per bp:1.808
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif0.29%
Number of Background Sequences with motif6.6
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets45.0 +/- 27.0bp
Average Position of motif in Background46.0 +/- 40.1bp
Strand Bias (log2 ratio + to - strand density)2.8
Multiplicity (# of sites on avg that occur together)4.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PKNOX2/MA0783.1/Jaspar

Match Rank:1
Score:0.65
Offset:4
Orientation:forward strand
Alignment:TGTCAGACATGTGTCA
----TGACAGGTGTCA
 A C G T A C T G A G C T A G T C C G T A A C T G C G T A A G T C C G T A G A C T A T C G A C G T A C T G A G C T A T G C C G T A
A C G T A C G T A C G T A C G T C G A T T A C G C T G A A G T C C G T A C A T G T A C G A G C T T C A G G A C T T G A C C T G A

TGIF2/MA0797.1/Jaspar

Match Rank:2
Score:0.65
Offset:4
Orientation:forward strand
Alignment:TGTCAGACATGTGTCA
----TGACAGCTGTCA
 A C G T A C T G A G C T A G T C C G T A A C T G C G T A A G T C C G T A G A C T A T C G A C G T A C T G A G C T A T G C C G T A
A C G T A C G T A C G T A C G T G C A T C T A G C T G A G A T C C T G A C A T G T A G C G A C T C T A G G A C T A T G C C G T A

PKNOX1/MA0782.1/Jaspar

Match Rank:3
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:TGTCAGACATGTGTCA
----TGACACCTGTCA
 A C G T A C T G A G C T A G T C C G T A A C T G C G T A A G T C C G T A G A C T A T C G A C G T A C T G A G C T A T G C C G T A
A C G T A C G T A C G T A C G T G C A T A T C G C G T A A G T C T C G A A T G C G T A C G A C T C A T G G A C T A T G C C T G A

TGIF1/MA0796.1/Jaspar

Match Rank:4
Score:0.62
Offset:4
Orientation:forward strand
Alignment:TGTCAGACATGTGTCA
----TGACAGCTGTCA
 A C G T A C T G A G C T A G T C C G T A A C T G C G T A A G T C C G T A G A C T A T C G A C G T A C T G A G C T A T G C C G T A
A C G T A C G T A C G T A C G T G C A T T C A G T C G A A G T C T C G A A C T G T A G C A G C T T A C G G C A T G T A C C G T A

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--TGTCAGACATGTGTCA
NCTGTCAATCAN------
 A C G T A C G T A C G T A C T G A G C T A G T C C G T A A C T G C G T A A G T C C G T A G A C T A T C G A C G T A C T G A G C T A T G C C G T A
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A A C G T A C G T A C G T A C G T A C G T A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:6
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--TGTCAGACATGTGTCA
SCTGTCAVTCAV------
 A C G T A C G T A C G T A C T G A G C T A G T C C G T A A C T G C G T A A G T C C G T A G A C T A T C G A C G T A C T G A G C T A T G C C G T A
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A A C G T A C G T A C G T A C G T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---TGTCAGACATGTGTCA
AGGTGHCAGACA-------
 A C G T A C G T A C G T A C G T A C T G A G C T A G T C C G T A A C T G C G T A A G T C C G T A G A C T A T C G A C G T A C T G A G C T A T G C C G T A
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:8
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-TGTCAGACATGTGTCA
CTGTCTGTCACCT----
 A C G T A C G T A C T G A G C T A G T C C G T A A C T G C G T A A G T C C G T A G A C T A T C G A C G T A C T G A G C T A T G C C G T A
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T A C G T A C G T A C G T A C G T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:9
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---TGTCAGACATGTGTCA
GSCTGTCACTCA-------
 A C G T A C G T A C G T A C G T A C T G A G C T A G T C C G T A A C T G C G T A A G T C C G T A G A C T A T C G A C G T A C T G A G C T A T G C C G T A
C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

HEY2/MA0649.1/Jaspar

Match Rank:10
Score:0.59
Offset:5
Orientation:forward strand
Alignment:TGTCAGACATGTGTCA
-----GACACGTGCC-
 A C G T A C T G A G C T A G T C C G T A A C T G C G T A A G T C C G T A G A C T A T C G A C G T A C T G A G C T A T G C C G T A
A C G T A C G T A C G T A C G T A C G T C T A G T C G A T G A C C T G A G T A C T A C G G A C T A T C G A G T C T A G C A C G T