Information for 2-GATGSAKGMCAYCTCC (Motif 3)

A C T G G T C A C G A T A T C G T A G C T G C A C A G T T A C G T G A C T A G C C T G A A G T C A T G C C A G T A T G C A G T C
Reverse Opposite:
A C T G A T C G G T C A T A C G T C A G G A C T A T C G A C T G A T G C G T C A A C G T A T C G A T G C G C T A A C G T A G T C
p-value:1e-14
log p-value:-3.286e+01
Information Content per bp:1.629
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif2.91%
Number of Background Sequences with motif107.4
Percentage of Background Sequences with motif0.26%
Average Position of motif in Targets50.8 +/- 17.5bp
Average Position of motif in Background55.1 +/- 37.9bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:1
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--GATGSAKGMCAYCTCC
ATGATKGATGRC------
 A C G T A C G T A C T G G T C A C G A T A T C G T A G C T G C A C A G T T A C G T G A C T A G C C T G A A G T C A T G C C A G T A T G C A G T C
C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C A C G T A C G T A C G T A C G T A C G T A C G T

PH0164.1_Six4/Jaspar

Match Rank:2
Score:0.55
Offset:1
Orientation:forward strand
Alignment:GATGSAKGMCAYCTCC--
-ATAAATGACACCTATCA
 A C T G G T C A C G A T A T C G T A G C T G C A C A G T T A C G T G A C T A G C C T G A A G T C A T G C C A G T A T G C A G T C A C G T A C G T
A C G T G C T A C A G T C T G A G T C A G C T A A G C T C A T G G T C A A G T C G T C A G T A C A G T C A G C T G T C A A G C T A G T C T C G A

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:3
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--GATGSAKGMCAYCTCC
TGGCAGNCTGCCAG----
 A C G T A C G T A C T G G T C A C G A T A T C G T A G C T G C A C A G T T A C G T G A C T A G C C T G A A G T C A T G C C A G T A T G C A G T C
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G A C G T A C G T A C G T A C G T

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:4
Score:0.51
Offset:6
Orientation:forward strand
Alignment:GATGSAKGMCAYCTCC--
------SNGCACCTGCHS
 A C T G G T C A C G A T A T C G T A G C T G C A C A G T T A C G T G A C T A G C C T G A A G T C A T G C C A G T A T G C A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A C G C T A G T A C G A G T C C G T A A G T C A G T C A C G T A C T G A G T C G A T C T A G C

ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.50
Offset:1
Orientation:reverse strand
Alignment:GATGSAKGMCAYCTCC
-AGGGAAGTCATTTCT
 A C T G G T C A C G A T A T C G T A G C T G C A C A G T T A C G T G A C T A G C C T G A A G T C A T G C C A G T A T G C A G T C
A C G T C T G A C T A G C T A G T C A G C G T A C T G A C T A G A G C T G T A C C T G A A G C T A G C T A C G T G A T C G A C T

POL008.1_DCE_S_I/Jaspar

Match Rank:6
Score:0.49
Offset:-1
Orientation:reverse strand
Alignment:-GATGSAKGMCAYCTCC
NGAAGC-----------
 A C G T A C T G G T C A C G A T A T C G T A G C T G C A C A G T T A C G T G A C T A G C C T G A A G T C A T G C C A G T A T G C A G T C
T A C G T A C G T G C A T C G A T A C G T G A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer

Match Rank:7
Score:0.49
Offset:-1
Orientation:forward strand
Alignment:-GATGSAKGMCAYCTCC
TGACANARRCCAGRC--
 A C G T A C T G G T C A C G A T A T C G T A G C T G C A C A G T T A C G T G A C T A G C C T G A A G T C A T G C C A G T A T G C A G T C
C G A T C T A G C T G A A T G C C T G A T C G A C G T A C T G A T C G A T A G C A G T C C G T A A C T G T C G A A T G C A C G T A C G T

PH0134.1_Pbx1/Jaspar

Match Rank:8
Score:0.49
Offset:-8
Orientation:reverse strand
Alignment:--------GATGSAKGMCAYCTCC
NNNNNATTGATGNGTGN-------
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G G T C A C G A T A T C G T A G C T G C A C A G T T A C G T G A C T A G C C T G A A G T C A T G C C A G T A T G C A G T C
A C G T A C T G G C A T C G A T C A G T G C T A C G A T A C G T A C T G C G T A G A C T A C T G C A T G C T A G G C A T T C A G C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer

Match Rank:9
Score:0.49
Offset:-2
Orientation:reverse strand
Alignment:--GATGSAKGMCAYCTCC
ATGATGCAAT--------
 A C G T A C G T A C T G G T C A C G A T A T C G T A G C T G C A C A G T T A C G T G A C T A G C C T G A A G T C A T G C C A G T A T G C A G T C
T G C A A G C T A C T G C G T A A G C T C A T G G A T C T G C A C G T A A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer

Match Rank:10
Score:0.49
Offset:-3
Orientation:forward strand
Alignment:---GATGSAKGMCAYCTCC-
VCAKCTGGNNNCCAGMTGBN
 A C G T A C G T A C G T A C T G G T C A C G A T A T C G T A G C T G C A C A G T T A C G T G A C T A G C C T G A A G T C A T G C C A G T A T G C A G T C A C G T
T G A C G T A C C G T A A C T G T G A C C G A T A C T G A T C G A G C T T A C G T C G A T A G C G T A C C G T A A T C G T G A C G C A T A C T G A C T G A T G C