Information for 11-CAGCACCATGCAGATT (Motif 20)

A T G C C G T A C T A G T A G C C G T A A G T C G T A C G T C A C G A T A C T G A G T C C G T A A T C G T C G A A C G T A C G T
Reverse Opposite:
T G C A T G C A A G C T T A G C G A C T C T A G A G T C C G T A C A G T A C T G C T A G C G A T A C T G A G T C C G A T A T C G
p-value:1e-9
log p-value:-2.245e+01
Information Content per bp:1.678
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif2.18%
Number of Background Sequences with motif98.0
Percentage of Background Sequences with motif0.24%
Average Position of motif in Targets49.3 +/- 27.6bp
Average Position of motif in Background52.6 +/- 36.6bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:1
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-CAGCACCATGCAGATT---
TCAGCACCATGGACAGCTCC
 A C G T A T G C C G T A C T A G T A G C C G T A A G T C G T A C G T C A C G A T A C T G A G T C C G T A A T C G T C G A A C G T A C G T A C G T A C G T A C G T
A G C T G A T C C T G A T C A G T A G C C T G A A T G C G A T C G C T A G A C T C T A G C T A G G T C A A T G C C G T A T C A G G T A C C A G T T A G C G A T C

REST/MA0138.2/Jaspar

Match Rank:2
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--CAGCACCATGCAGATT---
TTCAGCACCATGGACAGCGCC
 A C G T A C G T A T G C C G T A C T A G T A G C C G T A A G T C G T A C G T C A C G A T A C T G A G T C C G T A A T C G T C G A A C G T A C G T A C G T A C G T A C G T
C A G T A G C T G A T C T C G A T A C G A T G C C G T A A T G C G A T C G C T A G A C T C T A G T C A G G T C A A T G C G C T A T C A G G T A C C A T G T A G C G A T C

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:3
Score:0.55
Offset:1
Orientation:forward strand
Alignment:CAGCACCATGCAGATT
-GGCCYCCTGCTGDGH
 A T G C C G T A C T A G T A G C C G T A A G T C G T A C G T C A C G A T A C T G A G T C C G T A A T C G T C G A A C G T A C G T
A C G T C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:4
Score:0.54
Offset:6
Orientation:forward strand
Alignment:CAGCACCATGCAGATT
------CCTGCTGAGH
 A T G C C G T A C T A G T A G C C G T A A G T C G T A C G T C A C G A T A C T G A G T C C G T A A T C G T C G A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:CAGCACCATGCAGATT
---CCCCCTGCTGTG-
 A T G C C G T A C T A G T A G C C G T A A G T C G T A C G T C A C G A T A C T G A G T C C G T A A T C G T C G A A C G T A C G T
A C G T A C G T A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T

TFAP2A/MA0003.3/Jaspar

Match Rank:6
Score:0.50
Offset:1
Orientation:forward strand
Alignment:CAGCACCATGCAGATT
-CGCCTCAGGCA----
 A T G C C G T A C T A G T A G C C G T A A G T C G T A C G T C A C G A T A C T G A G T C C G T A A T C G T C G A A C G T A C G T
A C G T G T A C T A C G A T G C A G T C A G C T T A G C T G C A T C A G A T C G T A G C C G T A A C G T A C G T A C G T A C G T

TFAP2B(var.2)/MA0812.1/Jaspar

Match Rank:7
Score:0.50
Offset:1
Orientation:forward strand
Alignment:CAGCACCATGCAGATT
-AGCCTCAGGCA----
 A T G C C G T A C T A G T A G C C G T A A G T C G T A C G T C A C G A T A C T G A G T C C G T A A T C G T C G A A C G T A C G T
A C G T G T C A T A C G A T G C A G T C A G C T T A G C T G C A T C A G T A C G T A G C C G T A A C G T A C G T A C G T A C G T

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:8
Score:0.49
Offset:2
Orientation:reverse strand
Alignment:CAGCACCATGCAGATT
--GGACCACCCACG--
 A T G C C G T A C T A G T A G C C G T A A G T C G T A C G T C A C G A T A C T G A G T C C G T A A T C G T C G A A C G T A C G T
A C G T A C G T C T A G A T C G T C G A G T A C A G T C G C T A A T G C G T A C G A T C C G T A T A G C T C A G A C G T A C G T

POU2F2/MA0507.1/Jaspar

Match Rank:9
Score:0.49
Offset:5
Orientation:reverse strand
Alignment:CAGCACCATGCAGATT--
-----ATATGCAAATNNN
 A T G C C G T A C T A G T A G C C G T A A G T C G T A C G T C A C G A T A C T G A G T C C G T A A T C G T C G A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:10
Score:0.49
Offset:6
Orientation:reverse strand
Alignment:CAGCACCATGCAGATT
------CACGCA----
 A T G C C G T A C T A G T A G C C G T A A G T C G T A C G T C A C G A T A C T G A G T C C G T A A T C G T C G A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A G T A C C T A G G T A C C T G A A C G T A C G T A C G T A C G T