Information for 3-AACATGCATG (Motif 18)

T G C A T C G A A T G C T G C A C A G T C T A G T A G C G C T A A G C T T A C G
Reverse Opposite:
A T G C T C G A C G A T A T C G G A T C G T C A A C G T T A C G A G C T A C G T
p-value:1e-10
log p-value:-2.362e+01
Information Content per bp:1.537
Number of Target Sequences with motif215.0
Percentage of Target Sequences with motif31.30%
Number of Background Sequences with motif8621.8
Percentage of Background Sequences with motif20.73%
Average Position of motif in Targets50.3 +/- 25.9bp
Average Position of motif in Background51.0 +/- 42.1bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0178.1_Sox8_2/Jaspar

Match Rank:1
Score:0.68
Offset:1
Orientation:forward strand
Alignment:AACATGCATG-----
-ACATTCATGACACG
 T G C A T C G A A T G C T G C A C A G T C T A G T A G C G C T A A G C T T A C G A C G T A C G T A C G T A C G T A C G T
A C G T C G T A G A T C G C T A A C G T C G A T G A T C T C G A A C G T C T A G G C T A G T A C G T C A A T G C T A C G

PB0170.1_Sox17_2/Jaspar

Match Rank:2
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---AACATGCATG----
GACCACATTCATACAAT
 A C G T A C G T A C G T T G C A T C G A A T G C T G C A C A G T C T A G T A G C G C T A A G C T T A C G A C G T A C G T A C G T A C G T
T A C G G C T A A G T C G T A C G T C A A G T C G C T A A G C T C G A T T G A C C T G A A G C T T C G A G A T C T C G A C G T A C G A T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:3
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-AACATGCATG
GHATATKCAT-
 A C G T T G C A T C G A A T G C T G C A C A G T C T A G T A G C G C T A A G C T T A C G
C T A G G T A C C G T A G A C T C T G A C G A T C A T G G A T C C G T A C G A T A C G T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:4
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-AACATGCATG
GAATATTCAT-
 A C G T T G C A T C G A A T G C T G C A C A G T C T A G T A G C G C T A A G C T T A C G
T C A G G T C A C G T A A G C T C G T A G A C T C A G T A T G C T C G A C G A T A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:5
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-AACATGCATG
NNACTTGCCTT
 A C G T T G C A T C G A A T G C T G C A C A G T C T A G T A G C G C T A A G C T T A C G
T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T

PH0086.1_Irx5/Jaspar

Match Rank:6
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----AACATGCATG--
ANTNNTACATGTANNTN
 A C G T A C G T A C G T A C G T A C G T T G C A T C G A A T G C T G C A C A G T C T A G T A G C G C T A A G C T T A C G A C G T A C G T
G C T A G T C A G C A T G C A T C A G T C G A T G C T A A G T C C G T A G C A T T C A G C G A T G C T A C G A T G C T A G C A T G C A T

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:7
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:AACATGCATG
--CACGCA--
 T G C A T C G A A T G C T G C A C A G T C T A G T A G C G C T A A G C T T A C G
A C G T A C G T A G T C C G T A G T A C C T A G G T A C C T G A A C G T A C G T

PH0082.1_Irx2/Jaspar

Match Rank:8
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----AACATGCATG--
ANTNTTACATGTATNTA
 A C G T A C G T A C G T A C G T A C G T T G C A T C G A A T G C T G C A C A G T C T A G T A G C G C T A A G C T T A C G A C G T A C G T
C G T A T G C A G C A T G A C T G A C T C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A G A C T G C A T C G A T G C T A

PH0148.1_Pou3f3/Jaspar

Match Rank:9
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---AACATGCATG----
TNNATTATGCATANNTT
 A C G T A C G T A C G T T G C A T C G A A T G C T G C A C A G T C T A G T A G C G C T A A G C T T A C G A C G T A C G T A C G T A C G T
G C A T G C A T G A C T G T C A C G A T C G A T C G T A A G C T C A T G G T A C C T G A C G A T C T G A G C A T G A C T C G A T C G A T

PH0083.1_Irx3_1/Jaspar

Match Rank:10
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----AACATGCATG--
ANTATTACATGTANNNN
 A C G T A C G T A C G T A C G T A C G T T G C A T C G A A T G C T G C A C A G T C T A G T A G C G C T A A G C T T A C G A C G T A C G T
G C T A C T A G G C A T G C T A A C G T C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A A G C T G C A T G A C T G C A T