Information for 1-VAAACCACAA (Motif 1)

T A G C G C T A T C G A T C G A T G A C A G T C C T G A T A G C C T G A C T G A
Reverse Opposite:
G A C T G A C T A T C G G A C T A C T G A C T G A G C T A G C T C G A T A T C G
p-value:1e-126
log p-value:-2.903e+02
Information Content per bp:1.633
Number of Target Sequences with motif378.0
Percentage of Target Sequences with motif47.13%
Number of Background Sequences with motif5885.9
Percentage of Background Sequences with motif12.55%
Average Position of motif in Targets51.0 +/- 24.7bp
Average Position of motif in Background50.6 +/- 33.5bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.24
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:1
Score:0.98
Offset:0
Orientation:forward strand
Alignment:VAAACCACAA
NAAACCACAG
 T A G C G C T A T C G A T C G A T G A C A G T C C T G A T A G C C T G A C T G A
T A G C G C T A T C G A C T G A A G T C A G T C C T G A A G T C C G T A C T A G

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:2
Score:0.98
Offset:1
Orientation:forward strand
Alignment:VAAACCACAA-
-AAACCACANN
 T A G C G C T A T C G A T C G A T G A C A G T C C T G A T A G C C T G A C T G A A C G T
A C G T G C T A C T G A T C G A A G T C A G T C C T G A A G T C G T C A C T G A T G C A

RUNX1/MA0002.2/Jaspar

Match Rank:3
Score:0.96
Offset:1
Orientation:reverse strand
Alignment:VAAACCACAA--
-AAACCACAGAN
 T A G C G C T A T C G A T C G A T G A C A G T C C T G A T A G C C T G A C T G A A C G T A C G T
A C G T G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:4
Score:0.96
Offset:0
Orientation:forward strand
Alignment:VAAACCACAA--
NWAACCACADNN
 T A G C G C T A T C G A T C G A T G A C A G T C C T G A T A G C C T G A C T G A A C G T A C G T
T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:5
Score:0.95
Offset:1
Orientation:reverse strand
Alignment:VAAACCACAA-
-AAACCACAGC
 T A G C G C T A T C G A T C G A T G A C A G T C C T G A T A G C C T G A C T G A A C G T
A C G T G C T A T C G A T G C A T G A C G T A C T G C A A G T C C T G A C T A G T G A C

RUNX3/MA0684.1/Jaspar

Match Rank:6
Score:0.94
Offset:1
Orientation:forward strand
Alignment:VAAACCACAA-
-AAACCGCAAA
 T A G C G C T A T C G A T C G A T G A C A G T C C T G A T A G C C T G A C T G A A C G T
A C G T G C T A T C G A T G C A G T A C A T G C T C A G A T G C T G C A T C G A G C T A

RUNX2/MA0511.2/Jaspar

Match Rank:7
Score:0.93
Offset:1
Orientation:forward strand
Alignment:VAAACCACAA
-AAACCGCAA
 T A G C G C T A T C G A T C G A T G A C A G T C C T G A T A G C C T G A C T G A
A C G T G C T A C T G A G T C A A G T C A G T C C T A G A G T C T G C A T C G A

ZNF354C/MA0130.1/Jaspar

Match Rank:8
Score:0.72
Offset:2
Orientation:forward strand
Alignment:VAAACCACAA
--ATCCAC--
 T A G C G C T A T C G A T C G A T G A C A G T C C T G A T A G C C T G A C T G A
A C G T A C G T T G C A G C A T A G T C A G T C C G T A A T G C A C G T A C G T

FOXH1/MA0479.1/Jaspar

Match Rank:9
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--VAAACCACAA
TCCAATCCACA-
 A C G T A C G T T A G C G C T A T C G A T C G A T G A C A G T C C T G A T A G C C T G A C T G A
A G C T A G T C T A G C C G T A C G T A A C G T G T A C G T A C C G T A A G T C C G T A A C G T

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-VAAACCACAA-
SSAATCCACANN
 A C G T T A G C G C T A T C G A T C G A T G A C A G T C C T G A T A G C C T G A C T G A A C G T
A T G C T A G C C T G A C G T A A C G T G T A C G T A C C T G A A G T C C G T A C T G A G T A C