Information for 16-GTGGTTGCCAAAG (Motif 19)

A C T G A G C T A C T G A T C G A C G T A C G T A T C G G T A C A G T C C G T A G T C A C G T A A C T G
Reverse Opposite:
A G T C A C G T A C G T A C G T A C T G A C T G A T G C G T C A C G T A A T G C T G A C C T G A A G T C
p-value:1e-8
log p-value:-1.907e+01
Information Content per bp:1.860
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.85%
Number of Background Sequences with motif13.2
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets57.7 +/- 28.0bp
Average Position of motif in Background48.0 +/- 10.8bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx1/MA0509.1/Jaspar

Match Rank:1
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:GTGGTTGCCAAAG----
---GTTGCCATGGNAAC
 A C T G A G C T A C T G A T C G A C G T A C G T A T C G G T A C A G T C C G T A G T C A C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.61
Offset:2
Orientation:forward strand
Alignment:GTGGTTGCCAAAG---
--NGTTGCCATGGCAA
 A C T G A G C T A C T G A T C G A C G T A C G T A T C G G T A C A G T C C G T A G T C A C G T A A C T G A C G T A C G T A C G T
A C G T A C G T A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:GTGGTTGCCAAAG
---CTTGGCAA--
 A C T G A G C T A C T G A T C G A C G T A C G T A T C G G T A C A G T C C G T A G T C A C G T A A C T G
A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:4
Score:0.60
Offset:2
Orientation:forward strand
Alignment:GTGGTTGCCAAAG---
--GGTTGCCATGGCAA
 A C T G A G C T A C T G A T C G A C G T A C G T A T C G G T A C A G T C C G T A G T C A C G T A A C T G A C G T A C G T A C G T
A C G T A C G T C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

NFIX/MA0671.1/Jaspar

Match Rank:5
Score:0.60
Offset:3
Orientation:forward strand
Alignment:GTGGTTGCCAAAG
---CGTGCCAAG-
 A C T G A G C T A C T G A T C G A C G T A C G T A T C G G T A C A G T C C G T A G T C A C G T A A C T G
A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T

ZBTB7A/MA0750.1/Jaspar

Match Rank:6
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---GTGGTTGCCAAAG
TCGGTGGTCGCN----
 A C G T A C G T A C G T A C T G A G C T A C T G A T C G A C G T A C G T A T C G G T A C A G T C C G T A G T C A C G T A A C T G
A C G T G T A C C A T G A C T G C A G T T A C G C T A G C A G T A G T C A T C G A G T C T G A C A C G T A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:7
Score:0.59
Offset:3
Orientation:forward strand
Alignment:GTGGTTGCCAAAG
---GGTGCCAAGT
 A C T G A G C T A C T G A T C G A C G T A C G T A T C G G T A C A G T C C G T A G T C A C G T A A C T G
A C G T A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

NFIC/MA0161.1/Jaspar

Match Rank:8
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:GTGGTTGCCAAAG
-----TGCCAA--
 A C T G A G C T A C T G A T C G A C G T A C G T A T C G G T A C A G T C C G T A G T C A C G T A A C T G
A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:9
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GTGGTTGCCAAAG----
-CGGTTGCCATGGCAAC
 A C T G A G C T A C T G A T C G A C G T A C G T A T C G G T A C A G T C C G T A G T C A C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A G T C A T C G C T A G A G C T G A C T C T A G A G T C A G T C G C T A C A G T T C A G T C A G G A T C C T G A T C G A G A T C

PB0055.1_Rfx4_1/Jaspar

Match Rank:10
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GTGGTTGCCAAAG--
NNCGTTGCTATGGNN
 A C T G A G C T A C T G A T C G A C G T A C G T A T C G G T A C A G T C C G T A G T C A C G T A A C T G A C G T A C G T
G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A