Information for 9-TTGTAGGTCA (Motif 40)

C G A T C G A T A C T G A C G T C T G A C T A G A T C G C G A T A T G C C G T A
Reverse Opposite:
C G A T A T C G C G T A A T G C G A T C G A C T C G T A G T A C G C T A C G T A
p-value:1e-6
log p-value:-1.436e+01
Information Content per bp:1.716
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.41%
Number of Background Sequences with motif1.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets22.0 +/- 12.4bp
Average Position of motif in Background49.0 +/- 20.5bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORA(var.2)/MA0072.1/Jaspar

Match Rank:1
Score:0.75
Offset:-3
Orientation:forward strand
Alignment:---TTGTAGGTCA-
TATAAGTAGGTCAA
 A C G T A C G T A C G T C G A T C G A T A C T G A C G T C T G A C T A G A T C G C G A T A T G C C G T A A C G T
C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A

RORA/MA0071.1/Jaspar

Match Rank:2
Score:0.75
Offset:0
Orientation:forward strand
Alignment:TTGTAGGTCA
ATCAAGGTCA
 C G A T C G A T A C T G A C G T C T G A C T A G A T C G C G A T A T G C C G T A
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:3
Score:0.75
Offset:0
Orientation:forward strand
Alignment:TTGTAGGTCA
AAYTAGGTCA
 C G A T C G A T A C T G A C G T C T G A C T A G A T C G C G A T A T G C C G T A
G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:4
Score:0.73
Offset:4
Orientation:forward strand
Alignment:TTGTAGGTCA
----AGGTCA
 C G A T C G A T A C T G A C G T C T G A C T A G A T C G C G A T A T G C C G T A
A C G T A C G T A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:5
Score:0.67
Offset:2
Orientation:forward strand
Alignment:TTGTAGGTCA
--TRAGGTCA
 C G A T C G A T A C T G A C G T C T G A C T A G A T C G C G A T A T G C C G T A
A C G T A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A

NR4A2/MA0160.1/Jaspar

Match Rank:6
Score:0.66
Offset:3
Orientation:forward strand
Alignment:TTGTAGGTCA-
---AAGGTCAC
 C G A T C G A T A C T G A C G T C T G A C T A G A T C G C G A T A T G C C G T A A C G T
A C G T A C G T A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C

Esrra/MA0592.2/Jaspar

Match Rank:7
Score:0.65
Offset:0
Orientation:forward strand
Alignment:TTGTAGGTCA-
TTCAAGGTCAT
 C G A T C G A T A C T G A C G T C T G A C T A G A T C G C G A T A T G C C G T A A C G T
A C G T G A C T T A G C C T G A C T G A A C T G A C T G A C G T A T G C T C G A G C A T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:8
Score:0.64
Offset:2
Orientation:forward strand
Alignment:TTGTAGGTCA
--AGRGGTCA
 C G A T C G A T A C T G A C G T C T G A C T A G A T C G C G A T A T G C C G T A
A C G T A C G T T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A

Esrrg/MA0643.1/Jaspar

Match Rank:9
Score:0.64
Offset:1
Orientation:forward strand
Alignment:TTGTAGGTCA-
-TCAAGGTCAT
 C G A T C G A T A C T G A C G T C T G A C T A G A T C G C G A T A T G C C G T A A C G T
A C G T G A C T T A G C C T G A T C G A C A T G A T C G C A G T A G T C C T G A G C A T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:TTGTAGGTCA-
-TCAAGGTCAN
 C G A T C G A T A C T G A C G T C T G A C T A G A T C G C G A T A T G C C G T A A C G T
A C G T A G C T T A G C C T G A T C G A A T C G C A T G C A G T A T G C T C G A G T A C