Information for 3-CACAGACTAGTTGAGG (Motif 4)

A G T C C G T A A T G C C G T A A C T G C G T A A G T C G C A T C G T A A C T G G A C T A C G T A T C G C G T A A C T G A T C G
Reverse Opposite:
A T G C A G T C C G A T A T G C G T C A C T G A A G T C C G A T C G T A C T A G C G A T A G T C A C G T A T C G A C G T A C T G
p-value:1e-13
log p-value:-3.172e+01
Information Content per bp:1.781
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.81%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets59.8 +/- 29.6bp
Average Position of motif in Background17.9 +/- 6.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL009.1_DCE_S_II/Jaspar

Match Rank:1
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:CACAGACTAGTTGAGG
CACAGN----------
 A G T C C G T A A T G C C G T A A C T G C G T A A G T C G C A T C G T A A C T G G A C T A C G T A T C G C G T A A C T G A T C G
T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

RUNX1/MA0002.2/Jaspar

Match Rank:2
Score:0.51
Offset:-4
Orientation:reverse strand
Alignment:----CACAGACTAGTTGAGG
AAACCACAGAN---------
 A C G T A C G T A C G T A C G T A G T C C G T A A T G C C G T A A C T G C G T A A G T C G C A T C G T A A C T G G A C T A C G T A T C G C G T A A C T G A T C G
G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:3
Score:0.49
Offset:-5
Orientation:forward strand
Alignment:-----CACAGACTAGTTGAGG
NWAACCACADNN---------
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A T G C C G T A A C T G C G T A A G T C G C A T C G T A A C T G G A C T A C G T A T C G C G T A A C T G A T C G
T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Gata1/MA0035.3/Jaspar

Match Rank:4
Score:0.49
Offset:1
Orientation:reverse strand
Alignment:CACAGACTAGTTGAGG
-ANAGATAAGAA----
 A G T C C G T A A T G C C G T A A C T G C G T A A G T C G C A T C G T A A C T G G A C T A C G T A T C G C G T A A C T G A T C G
A C G T C T G A T A G C C G T A A C T G C G T A A C G T C G T A C T G A T C A G T C G A T C G A A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.49
Offset:1
Orientation:reverse strand
Alignment:CACAGACTAGTTGAGG
-BCAGACWA-------
 A G T C C G T A A T G C C G T A A C T G C G T A A G T C G C A T C G T A A C T G G A C T A C G T A T C G C G T A A C T G A T C G
A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:6
Score:0.48
Offset:-7
Orientation:forward strand
Alignment:-------CACAGACTAGTTGAGG
CANAGNNCAAAGTCCA-------
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A T G C C G T A A C T G C G T A A G T C G C A T C G T A A C T G G A C T A C G T A T C G C G T A A C T G A T C G
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

HNF4G/MA0484.1/Jaspar

Match Rank:7
Score:0.48
Offset:-6
Orientation:forward strand
Alignment:------CACAGACTAGTTGAGG
AGAGTCCAAAGTCCA-------
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A T G C C G T A A C T G C G T A A G T C G C A T C G T A A C T G G A C T A C G T A T C G C G T A A C T G A T C G
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:8
Score:0.48
Offset:-4
Orientation:reverse strand
Alignment:----CACAGACTAGTTGAGG
AAACCACAGC----------
 A C G T A C G T A C G T A C G T A G T C C G T A A T G C C G T A A C T G C G T A A G T C G C A T C G T A A C T G G A C T A C G T A T C G C G T A A C T G A T C G
G C T A T C G A T G C A T G A C G T A C T G C A A G T C C T G A C T A G T G A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:9
Score:0.48
Offset:2
Orientation:forward strand
Alignment:CACAGACTAGTTGAGG
--AAGGCAAGTGT---
 A G T C C G T A A T G C C G T A A C T G C G T A A G T C G C A T C G T A A C T G G A C T A C G T A T C G C G T A A C T G A T C G
A C G T A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T A C G T A C G T A C G T

Gata4/MA0482.1/Jaspar

Match Rank:10
Score:0.47
Offset:0
Orientation:reverse strand
Alignment:CACAGACTAGTTGAGG
NNGAGATAAGA-----
 A G T C C G T A A T G C C G T A A C T G C G T A A G T C G C A T C G T A A C T G G A C T A C G T A T C G C G T A A C T G A T C G
T C A G C T A G T A C G C G T A A C T G C G T A A C G T C G T A C T G A T A C G T C G A A C G T A C G T A C G T A C G T A C G T