Information for 9-ACAGACAAAT (Motif 10)

C G T A A G T C C G T A A T C G C T G A A G T C C G T A T C G A C G T A C G A T
Reverse Opposite:
C G T A A C G T A C G T A C G T C T A G A G C T A T G C A C G T A C T G G A C T
p-value:1e-19
log p-value:-4.396e+01
Information Content per bp:1.854
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif1.77%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets53.7 +/- 25.5bp
Average Position of motif in Background55.0 +/- 19.2bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:1
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:ACAGACAAAT
BCAGACWA--
 C G T A A G T C C G T A A T C G C T G A A G T C C G T A T C G A C G T A C G A T
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T

PB0166.1_Sox12_2/Jaspar

Match Rank:2
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--ACAGACAAAT----
AAACAGACAAAGGAAT
 A C G T A C G T C G T A A G T C C G T A A T C G C T G A A G T C C G T A T C G A C G T A C G A T A C G T A C G T A C G T A C G T
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:ACAGACAAAT
CCAGACAG--
 C G T A A G T C C G T A A T C G C T G A A G T C C G T A T C G A C G T A C G A T
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:ACAGACAAAT
CCAGACRSVB
 C G T A A G T C C G T A A T C G C T G A A G T C C G T A T C G A C G T A C G A T
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

PB0060.1_Smad3_1/Jaspar

Match Rank:5
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----ACAGACAAAT--
CAAATCCAGACATCACA
 A C G T A C G T A C G T A C G T A C G T C G T A A G T C C G T A A T C G C T G A A G T C C G T A T C G A C G T A C G A T A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

POU2F2/MA0507.1/Jaspar

Match Rank:6
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:ACAGACAAAT---
ATATGCAAATNNN
 C G T A A G T C C G T A A T C G C T G A A G T C C G T A T C G A C G T A C G A T A C G T A C G T A C G T
C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:7
Score:0.62
Offset:0
Orientation:forward strand
Alignment:ACAGACAAAT
ATATGCAAAT
 C G T A A G T C C G T A A T C G C T G A A G T C C G T A T C G A C G T A C G A T
G T C A G C A T G C T A C A G T C T A G G A T C C G T A C T G A C G T A C G A T

Sox3/MA0514.1/Jaspar

Match Rank:8
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:ACAGACAAAT-
-AAAACAAAGG
 C G T A A G T C C G T A A T C G C T G A A G T C C G T A T C G A C G T A C G A T A C G T
A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----ACAGACAAAT
AGGTGHCAGACA---
 A C G T A C G T A C G T A C G T A C G T C G T A A G T C C G T A A T C G C T G A A G T C C G T A T C G A C G T A C G A T
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T A C G T

PB0208.1_Zscan4_2/Jaspar

Match Rank:10
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----ACAGACAAAT--
CGAAGCACACAAAATA
 A C G T A C G T A C G T A C G T C G T A A G T C C G T A A T C G C T G A A G T C C G T A T C G A C G T A C G A T A C G T A C G T
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A