Information for 19-CAGGCCCTTCAAA (Motif 11)

A G T C C G T A A C T G A C T G A G T C A G T C A G T C A C G T A G C T A G T C C G T A G T C A C T G A
Reverse Opposite:
A G C T A C G T A C G T A C T G C T G A C G T A A C T G A C T G A C T G G T A C A G T C A C G T A C T G
p-value:1e-8
log p-value:-1.987e+01
Information Content per bp:1.913
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.66%
Number of Background Sequences with motif3.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets49.2 +/- 21.3bp
Average Position of motif in Background61.5 +/- 25.2bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Klf12/MA0742.1/Jaspar

Match Rank:1
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CAGGCCCTTCAAA
GACCACGCCCTTATT-
 A C G T A C G T A C G T A G T C C G T A A C T G A C T G A G T C A G T C A G T C A C G T A G C T A G T C C G T A G T C A C T G A
C A T G T C G A G T A C T A G C T G C A G T A C C T A G A G T C A G T C A G T C G C A T G C A T G C T A G C A T G C A T A C G T

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:2
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-CAGGCCCTTCAAA
CTAGGCCT------
 A C G T A G T C C G T A A C T G A C T G A G T C A G T C A G T C A C G T A G C T A G T C C G T A G T C A C T G A
T A G C A G C T C T G A A C T G A T C G A T G C G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-CAGGCCCTTCAAA
CNAGGCCT------
 A C G T A G T C C G T A A C T G A C T G A G T C A G T C A G T C A C G T A G C T A G T C C G T A G T C A C T G A
A T G C G A T C C T G A A C T G A C T G A G T C A G T C A G C T A C G T A C G T A C G T A C G T A C G T A C G T

Esrra/MA0592.2/Jaspar

Match Rank:4
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:CAGGCCCTTCAAA
-ATGACCTTGAA-
 A G T C C G T A A C T G A C T G A G T C A G T C A G T C A C G T A G C T A G T C C G T A G T C A C T G A
A C G T C G T A A G C T T A C G T G C A T G A C T G A C A G C T A G C T A T C G C T G A T G C A A C G T

LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer

Match Rank:5
Score:0.55
Offset:0
Orientation:forward strand
Alignment:CAGGCCCTTCAAA
AAGACCCYYN---
 A G T C C G T A A C T G A C T G A G T C A G T C A G T C A C G T A G C T A G T C C G T A G T C A C T G A
T C G A T G C A A C T G G T C A A G T C A G T C A G T C A G T C A G C T T G A C A C G T A C G T A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:6
Score:0.54
Offset:1
Orientation:forward strand
Alignment:CAGGCCCTTCAAA
-AASCACTCAA--
 A G T C C G T A A C T G A C T G A G T C A G T C A G T C A C G T A G C T A G T C C G T A G T C A C T G A
A C G T C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A A C G T A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:7
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:CAGGCCCTTCAAA
--NSCACTYVAV-
 A G T C C G T A A C T G A C T G A G T C A G T C A G T C A C G T A G C T A G T C C G T A G T C A C T G A
A C G T A C G T C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G A C G T

PH0113.1_Nkx2-4/Jaspar

Match Rank:8
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-CAGGCCCTTCAAA--
TAAGCCACTTGAAATT
 A C G T A G T C C G T A A C T G A C T G A G T C A G T C A G T C A C G T A G C T A G T C C G T A G T C A C T G A A C G T A C G T
G C A T C G T A C G T A C T A G T A G C G A T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G C T A G C A T G A C T

NKX2-8/MA0673.1/Jaspar

Match Rank:9
Score:0.53
Offset:3
Orientation:forward strand
Alignment:CAGGCCCTTCAAA
---CCACTTGAA-
 A G T C C G T A A C T G A C T G A G T C A G T C A G T C A C G T A G C T A G T C C G T A G T C A C T G A
A C G T A C G T A C G T T A G C G A T C G T C A G A T C A G C T G A C T T A C G G C T A T C G A A C G T

PB0151.1_Myf6_2/Jaspar

Match Rank:10
Score:0.53
Offset:-5
Orientation:forward strand
Alignment:-----CAGGCCCTTCAAA
AGCAACAGCCGCACC---
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G A C T G A G T C A G T C A G T C A C G T A G C T A G T C C G T A G T C A C T G A
T C G A T A C G T G A C T C G A T G C A G A T C T C G A C T A G T G A C T A G C A T C G T A G C C T G A T G A C G A T C A C G T A C G T A C G T