Information for 12-TCGGCTTTTTGAC (Motif 22)

A C G T A G T C A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C T G G T C A G T A C
Reverse Opposite:
A C T G C A G T A G T C C G T A C G T A C G T A C G T A C G T A A C T G A G T C G T A C A C T G G T C A
p-value:1e-5
log p-value:-1.180e+01
Information Content per bp:1.935
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.36%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets45.3 +/- 20.9bp
Average Position of motif in Background47.0 +/- 8.6bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)2.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SPI1/MA0080.4/Jaspar

Match Rank:1
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----TCGGCTTTTTGAC
TACTTCCGCTTTTT---
 A C G T A C G T A C G T A C G T A C G T A G T C A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C T G G T C A G T A C
G C A T C T G A T A G C C G A T C A G T A T G C G A T C A C T G A T G C G C A T C G A T G C A T G A C T A G C T A C G T A C G T A C G T

Rarg/MA0859.1/Jaspar

Match Rank:2
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:TCGGCTTTTTGAC---
TTGACCTTTTGACCTT
 A C G T A G T C A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C T G G T C A G T A C A C G T A C G T A C G T
C G A T A G C T T C A G T G C A T G A C G T A C A G C T G A C T G C A T A G C T T C A G T G C A T G A C A G T C A G C T A G C T

RARA/MA0729.1/Jaspar

Match Rank:3
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--TCGGCTTTTTGAC---
CATTGACCTTTTGACCTC
 A C G T A C G T A C G T A G T C A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C T G G T C A G T A C A C G T A C G T A C G T
T G A C G T C A C G A T A G C T C T A G C G T A G T A C G T A C A C G T G C A T G C A T A G C T A T C G T C G A G T A C A G T C A G C T G A T C

Rarb/MA0857.1/Jaspar

Match Rank:4
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:TCGGCTTTTTGAC----
-TGACCTTTTGACCTTT
 A C G T A G T C A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C T G G T C A G T A C A C G T A C G T A C G T A C G T
A C G T G A C T T C A G T C G A T G A C A G T C A G C T G A C T C G A T A G C T T A C G G T C A T G A C G T A C A G C T G A C T C G A T

Nr2f6(var.2)/MA0728.1/Jaspar

Match Rank:5
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:TCGGCTTTTTGAC---
-TGACCTTTTGACCTC
 A C G T A G T C A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C T G G T C A G T A C A C G T A C G T A C G T
A C G T A G C T C T A G C G T A G T A C A G T C A C G T G A C T G C A T C A G T T C A G G T C A A G T C A G T C G A C T A G T C

PH0065.1_Hoxc10/Jaspar

Match Rank:6
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:TCGGCTTTTTGAC----
-ANNTTTTACGACNTNN
 A C G T A G T C A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C T G G T C A G T A C A C G T A C G T A C G T A C G T
A C G T T G C A T A G C C T A G G C A T C A G T C G A T C G A T C G T A A G T C A C T G C T G A A G T C G A C T G C A T G C A T C G T A

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:7
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:TCGGCTTTTTGAC-
TTGGCATGGTGCCA
 A C G T A G T C A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C T G G T C A G T A C A C G T
G A C T A C G T A C T G A C T G A G T C C G T A G A C T A T C G A T C G C A G T A C T G A G T C A G T C C G T A

FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer

Match Rank:8
Score:0.53
Offset:3
Orientation:forward strand
Alignment:TCGGCTTTTTGAC--
---SCHTGTTTACAT
 A C G T A G T C A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C T G G T C A G T A C A C G T A C G T
A C G T A C G T A C G T T A C G T A G C G C T A C G A T C T A G A C G T C A G T C A G T G C T A A G T C G T C A G C A T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:9
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:TCGGCTTTTTGAC
---NTTTTATGAC
 A C G T A G T C A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C T G G T C A G T A C
A C G T A C G T A C G T C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C

Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer

Match Rank:10
Score:0.53
Offset:4
Orientation:forward strand
Alignment:TCGGCTTTTTGAC---
----CNTGTTTACATA
 A C G T A G T C A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C T G G T C A G T A C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A T G C G A C T A C G T C T A G A C G T A C G T A C G T C T G A G A T C G C T A A G C T C G T A