Information for 5-GATGGATGGGKGW (Motif 6)

A C T G G T C A C A G T A C T G A C T G C G T A A G C T C T A G A C T G A T C G C A T G A C T G C G A T
Reverse Opposite:
G C T A A G T C G T A C A T G C A G T C G A T C C T G A A C G T G T A C A G T C G C T A A C G T A G T C
p-value:1e-9
log p-value:-2.270e+01
Information Content per bp:1.785
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.07%
Number of Background Sequences with motif6.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets52.6 +/- 21.1bp
Average Position of motif in Background48.6 +/- 16.5bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:1
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--GATGGATGGGKGW
ATGATKGATGRC---
 A C G T A C G T A C T G G T C A C A G T A C T G A C T G C G T A A G C T C T A G A C T G A T C G C A T G A C T G C G A T
C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C A C G T A C G T A C G T

Hoxa9/MA0594.1/Jaspar

Match Rank:2
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-GATGGATGGGKGW
TGATTTATGGC---
 A C G T A C T G G T C A C A G T A C T G A C T G C G T A A G C T C T A G A C T G A T C G C A T G A C T G C G A T
C G A T C T A G G C T A A C G T C G A T A C G T C G T A A G C T C A T G C T A G A T G C A C G T A C G T A C G T

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:3
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GATGGATGGGKGW
TGATTRATGGCY--
 A C G T A C T G G T C A C A G T A C T G A C T G C G T A A G C T C T A G A C T G A T C G C A T G A C T G C G A T
C G A T C T A G T C G A A G C T C G A T C T G A C G T A A G C T A C T G C T A G A T G C G A T C A C G T A C G T

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:4
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GATGGATGGGKGW
TGATTTATGGCC--
 A C G T A C T G G T C A C A G T A C T G A C T G C G T A A G C T C T A G A C T G A T C G C A T G A C T G C G A T
C G A T C T A G G C T A C G A T C A G T A C G T G T C A A G C T C A T G T C A G A G T C A G T C A C G T A C G T

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:5
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GATGGATGGGKGW
TGATTTATGGCC--
 A C G T A C T G G T C A C A G T A C T G A C T G C G T A A G C T C T A G A C T G A T C G C A T G A C T G C G A T
C G A T C T A G C G T A C G A T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C A C G T A C G T

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:6
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GATGGATGGGKGW
TGATTGATGA----
 A C G T A C T G G T C A C A G T A C T G A C T G C G T A A G C T C T A G A C T G A T C G C A T G A C T G C G A T
C G A T T C A G G T C A A G C T C G A T C T A G C G T A A C G T C A T G C T G A A C G T A C G T A C G T A C G T

RREB1/MA0073.1/Jaspar

Match Rank:7
Score:0.59
Offset:-8
Orientation:reverse strand
Alignment:--------GATGGATGGGKGW
NGGGGGGGGGTGGTTTGGGG-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G G T C A C A G T A C T G A C T G C G T A A G C T C T A G A C T G A T C G C A T G A C T G C G A T
A C G T A T C G C A T G A C T G C A T G A C T G A C T G A C T G A C T G A C T G A C G T A C T G C A T G A C G T A C G T A C G T A C T G A C T G A C T G A C T G A C G T

Hoxc9/MA0485.1/Jaspar

Match Rank:8
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--GATGGATGGGKGW
NTGATTTATGGCC--
 A C G T A C G T A C T G G T C A C A G T A C T G A C T G C G T A A G C T C T A G A C T G A T C G C A T G A C T G C G A T
T C A G C G A T C T A G C G T A A C G T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C A C G T A C G T

PH0134.1_Pbx1/Jaspar

Match Rank:9
Score:0.59
Offset:-8
Orientation:reverse strand
Alignment:--------GATGGATGGGKGW
NNNNNATTGATGNGTGN----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G G T C A C A G T A C T G A C T G C G T A A G C T C T A G A C T G A T C G C A T G A C T G C G A T
A C G T A C T G G C A T C G A T C A G T G C T A C G A T A C G T A C T G C G T A G A C T A C T G C A T G C T A G G C A T T C A G C T G A A C G T A C G T A C G T A C G T

Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.58
Offset:2
Orientation:forward strand
Alignment:GATGGATGGGKGW
--TGCGTGGGYG-
 A C T G G T C A C A G T A C T G A C T G C G T A A G C T C T A G A C T G A T C G C A T G A C T G C G A T
A C G T A C G T C A G T T C A G G A T C A C T G A C G T C T A G A C T G A C T G G A C T C T A G A C G T