Information for 23-TTCTGGCCTGTCT (Motif 23)

A G C T A C G T A G T C A C G T A C T G C T A G A G T C A G T C A C G T A C T G A C G T A G T C A C G T
Reverse Opposite:
C G T A A C T G C G T A A G T C C G T A A C T G A C T G A G T C A G T C C G T A A C T G C G T A C T G A
p-value:1e-5
log p-value:-1.364e+01
Information Content per bp:1.925
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.59%
Number of Background Sequences with motif5.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets37.5 +/- 12.5bp
Average Position of motif in Background33.6 +/- 9.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer

Match Rank:1
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:TTCTGGCCTGTCT--
GYCTGGYYTNTGTCA
 A G C T A C G T A G T C A C G T A C T G C T A G A G T C A G T C A C G T A C T G A C G T A G T C A C G T A C G T A C G T
A T C G A G C T A G T C A C G T A C T G A T C G A G C T G A C T G C A T A G C T G A C T T A C G A G C T G A T C G C T A

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:2
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-TTCTGGCCTGTCT
GGTCTGGCAT----
 A C G T A G C T A C G T A G T C A C G T A C T G C T A G A G T C A G T C A C G T A C T G A C G T A G T C A C G T
A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:3
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:TTCTGGCCTGTCT
---TGACCTYA--
 A G C T A C G T A G T C A C G T A C T G C T A G A G T C A G T C A C G T A C T G A C G T A G T C A C G T
A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:TTCTGGCCTGTCT
--CTGACCTTTG-
 A G C T A C G T A G T C A C G T A C T G C T A G A G T C A G T C A C G T A C T G A C G T A G T C A C G T
A C G T A C G T A T G C A C G T T A C G T G C A G T A C A G T C G A C T A G C T A C G T T C A G A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.56
Offset:7
Orientation:forward strand
Alignment:TTCTGGCCTGTCT--
-------CTGTCTGG
 A G C T A C G T A G T C A C G T A C T G C T A G A G T C A G T C A C G T A C T G A C G T A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:6
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-TTCTGGCCTGTCT
NNACTTGCCTT---
 A C G T A G C T A C G T A G T C A C G T A C T G C T A G A G T C A G T C A C G T A C T G A C G T A G T C A C G T
T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.56
Offset:5
Orientation:forward strand
Alignment:TTCTGGCCTGTCT--
-----VBSYGTCTGG
 A G C T A C G T A G T C A C G T A C T G C T A G A G T C A G T C A C G T A C T G A C G T A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:8
Score:0.55
Offset:3
Orientation:forward strand
Alignment:TTCTGGCCTGTCT--
---TGACCTTTNCNT
 A G C T A C G T A G T C A C G T A C T G C T A G A G T C A G T C A C G T A C T G A C G T A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T A G C G T A A G T C G T A C A C G T A C G T A C G T G T C A G T A C T G A C G A C T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:9
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:TTCTGGCCTGTCT
---TGACCT----
 A G C T A C G T A G T C A C G T A C T G C T A G A G T C A G T C A C G T A C T G A C G T A G T C A C G T
A C G T A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:10
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:TTCTGGCCTGTCT-------
---NNTNNTGTCTGGNNTNG
 A G C T A C G T A G T C A C G T A C T G C T A G A G T C A G T C A C G T A C T G A C G T A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G