Information for 20-CAGAGCAGCCGGC (Motif 18)

A G T C C T G A A C T G C G T A A C T G A G T C C G T A A C T G A T G C A G T C C T A G A C T G A G T C
Reverse Opposite:
A C T G A G T C A G T C A C T G A T C G G T A C A C G T A C T G A G T C A C G T A G T C A G C T A C T G
p-value:1e-7
log p-value:-1.727e+01
Information Content per bp:1.904
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.59%
Number of Background Sequences with motif2.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets38.2 +/- 32.9bp
Average Position of motif in Background36.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL013.1_MED-1/Jaspar

Match Rank:1
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CAGAGCAGCCGGC
CGGAGC-------
 A G T C C T G A A C T G C G T A A C T G A G T C C G T A A C T G A T G C A G T C C T A G A C T G A G T C
A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0190.1_Tcfap2b_2/Jaspar

Match Rank:2
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CAGAGCAGCCGGC---
-ATTGCCTCAGGCAAT
 A G T C C T G A A C T G C G T A A C T G A G T C C G T A A C T G A T G C A G T C C T A G A C T G A G T C A C G T A C G T A C G T
A C G T C G T A C A G T G C A T T C A G G A T C G T A C A C G T A T G C G T C A C T A G C A T G G T A C C T G A G T C A G C A T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CAGAGCAGCCGGC
CACAGCAGGGGG-
 A G T C C T G A A C T G C G T A A C T G A G T C C G T A A C T G A T G C A G T C C T A G A C T G A G T C
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:4
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-CAGAGCAGCCGGC-
DCHCAGCAGGRGGCC
 A C G T A G T C C T G A A C T G C G T A A C T G A G T C C G T A A C T G A T G C A G T C C T A G A C T G A G T C A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:5
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---CAGAGCAGCCGGC
CCGCATAGCAACGGA-
 A C G T A C G T A C G T A G T C C T G A A C T G C G T A A C T G A G T C C G T A A C T G A T G C A G T C C T A G A C T G A G T C
A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:6
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---CAGAGCAGCCGGC
CCACACAGCAGGAGA-
 A C G T A C G T A C G T A G T C C T G A A C T G C G T A A C T G A G T C C G T A A C T G A T G C A G T C C T A G A C T G A G T C
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T

PB0055.1_Rfx4_1/Jaspar

Match Rank:7
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---CAGAGCAGCCGGC
TACCATAGCAACGGT-
 A C G T A C G T A C G T A G T C C T G A A C T G C G T A A C T G A G T C C G T A A C T G A T G C A G T C C T A G A C T G A G T C
A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T A C G T

Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer

Match Rank:8
Score:0.53
Offset:1
Orientation:forward strand
Alignment:CAGAGCAGCCGGC
-VNAVCAGCTGGC
 A G T C C T G A A C T G C G T A A C T G A G T C C G T A A C T G A T G C A G T C C T A G A C T G A G T C
A C G T T C A G A C G T T C G A T A G C A G T C C G T A A C T G G T A C A C G T A C T G A T C G A G T C

PB0206.1_Zic2_2/Jaspar

Match Rank:9
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---CAGAGCAGCCGGC
CCACACAGCAGGAGA-
 A C G T A C G T A C G T A G T C C T G A A C T G C G T A A C T G A G T C C G T A A C T G A T G C A G T C C T A G A C T G A G T C
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:10
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---CAGAGCAGCCGGC
GAGCACAGCAGGACA-
 A C G T A C G T A C G T A G T C C T G A A C T G C G T A A C T G A G T C C G T A A C T G A T G C A G T C C T A G A C T G A G T C
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A A C G T