Information for 5-MSCYKCTCTTGTSKSM (Motif 11)

G T C A A T G C A G T C A G C T A C G T A G T C A G C T A G T C A C G T A C G T A C T G A C G T A T C G A C T G A T G C G T C A
Reverse Opposite:
A C G T A T C G G T A C A T G C C G T A A G T C C G T A C G T A C T A G C T G A A C T G G T C A C T G A C T A G A T C G A C G T
p-value:1e-8
log p-value:-1.931e+01
Information Content per bp:1.799
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif1.90%
Number of Background Sequences with motif4.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets49.4 +/- 28.1bp
Average Position of motif in Background51.0 +/- 8.1bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0168.1_Sox14_2/Jaspar

Match Rank:1
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:MSCYKCTCTTGTSKSM-
--NNNCCATTGTGTNAN
 G T C A A T G C A G T C A G C T A C G T A G T C A G C T A G T C A C G T A C G T A C T G A C G T A T C G A C T G A T G C G T C A A C G T
A C G T A C G T A T C G T G A C A C T G A G T C G A T C C G T A A C G T A C G T T A C G G C A T A T C G A G C T T C A G T G C A T C A G

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:2
Score:0.58
Offset:5
Orientation:forward strand
Alignment:MSCYKCTCTTGTSKSM
-----CCWTTGTY---
 G T C A A T G C A G T C A G C T A C G T A G T C A G C T A G T C A C G T A C G T A C T G A C G T A T C G A C T G A T G C G T C A
A C G T A C G T A C G T A C G T A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T A C G T A C G T A C G T

Mecom/MA0029.1/Jaspar

Match Rank:3
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:MSCYKCTCTTGTSKSM
-TNTTATCTTATCTT-
 G T C A A T G C A G T C A G C T A C G T A G T C A G C T A G T C A C G T A C G T A C T G A C G T A T C G A C T G A T G C G T C A
A C G T A C G T T A C G A G C T C G A T C T G A A C G T A G T C A G C T A C G T C T G A A C G T T A G C G C A T G A C T A C G T

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:4
Score:0.56
Offset:5
Orientation:forward strand
Alignment:MSCYKCTCTTGTSKSM
-----CCATTGTTNY-
 G T C A A T G C A G T C A G C T A C G T A G T C A G C T A G T C A C G T A C G T A C T G A C G T A T C G A C T G A T G C G T C A
A C G T A C G T A C G T A C G T A C G T A T G C G T A C C G T A A G C T G C A T T A C G A G C T A G C T A G T C A G C T A C G T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:5
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:MSCYKCTCTTGTSKSM
----NCCATTGTTY--
 G T C A A T G C A G T C A G C T A C G T A G T C A G C T A G T C A C G T A C G T A C T G A C G T A T C G A C T G A T G C G T C A
A C G T A C G T A C G T A C G T C T A G A G T C G A T C G C T A C G A T A C G T A T C G A C G T A G C T G A C T A C G T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:6
Score:0.54
Offset:5
Orientation:forward strand
Alignment:MSCYKCTCTTGTSKSM
-----CCTTTGTT---
 G T C A A T G C A G T C A G C T A C G T A G T C A G C T A G T C A C G T A C G T A C T G A C G T A T C G A C T G A T G C G T C A
A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A C G T A C G T A C G T

PB0183.1_Sry_2/Jaspar

Match Rank:7
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:MSCYKCTCTTGTSKSM---
--CNNNTATTGTTCNNNNN
 G T C A A T G C A G T C A G C T A C G T A G T C A G C T A G T C A C G T A C G T A C T G A C G T A T C G A C T G A T G C G T C A A C G T A C G T A C G T
A C G T A C G T A T G C C T G A A G T C A G T C G A C T C G T A A C G T A G C T T C A G G C A T A C G T A G T C G T A C C A T G G C A T C T A G C T G A

Sox3/MA0514.1/Jaspar

Match Rank:8
Score:0.54
Offset:5
Orientation:forward strand
Alignment:MSCYKCTCTTGTSKSM
-----CCTTTGTTTT-
 G T C A A T G C A G T C A G C T A C G T A G T C A G C T A G T C A C G T A C G T A C T G A C G T A T C G A C T G A T G C G T C A
A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T A C G T

Sox17/MA0078.1/Jaspar

Match Rank:9
Score:0.53
Offset:4
Orientation:forward strand
Alignment:MSCYKCTCTTGTSKSM
----CTCATTGTC---
 G T C A A T G C A G T C A G C T A C G T A G T C A G C T A G T C A C G T A C G T A C T G A C G T A T C G A C T G A T G C G T C A
A C G T A C G T A C G T A C G T G A C T G A C T G A T C C G T A A G C T A C G T A C T G A C G T A T G C A C G T A C G T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:10
Score:0.53
Offset:5
Orientation:forward strand
Alignment:MSCYKCTCTTGTSKSM
-----CCWTTGTYYB-
 G T C A A T G C A G T C A G C T A C G T A G T C A G C T A G T C A C G T A C G T A C T G A C G T A T C G A C T G A T G C G T C A
A C G T A C G T A C G T A C G T A C G T A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G A C G T