Information for 1-GCGGCAGGTG (Motif 1)

T A C G G T A C A C T G T A C G A G T C C T G A C A T G T A C G G A C T A T C G
Reverse Opposite:
A T G C C T G A A T G C G T A C A G C T A C T G A T G C T G A C C A T G A T G C
p-value:1e-29
log p-value:-6.699e+01
Information Content per bp:1.683
Number of Target Sequences with motif74.0
Percentage of Target Sequences with motif35.24%
Number of Background Sequences with motif3617.8
Percentage of Background Sequences with motif7.71%
Average Position of motif in Targets53.6 +/- 24.8bp
Average Position of motif in Background49.9 +/- 36.3bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.19
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:1
Score:0.91
Offset:1
Orientation:reverse strand
Alignment:GCGGCAGGTG---
-SDGCAGGTGCNS
 T A C G G T A C A C T G T A C G A G T C C T G A C A T G T A C G G A C T A T C G A C G T A C G T A C G T
A C G T A T C G C T A G C T A G A G T C C G T A A C T G A C T G A C G T A C T G A T G C G A T C A T G C

E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:2
Score:0.89
Offset:2
Orientation:reverse strand
Alignment:GCGGCAGGTG--
--NNCAGGTGNN
 T A C G G T A C A C T G T A C G A G T C C T G A C A T G T A C G G A C T A T C G A C G T A C G T
A C G T A C G T C A G T T A C G A G T C C G T A A C T G A C T G A C G T A C T G A C G T T A C G

TCF3/MA0522.2/Jaspar

Match Rank:3
Score:0.88
Offset:2
Orientation:reverse strand
Alignment:GCGGCAGGTG--
--NNCAGGTGTN
 T A C G G T A C A C T G T A C G A G T C C T G A C A T G T A C G G A C T A T C G A C G T A C G T
A C G T A C G T G T C A T C A G A G T C C G T A A T C G T A C G C G A T A C T G A G C T C A G T

TCF4/MA0830.1/Jaspar

Match Rank:4
Score:0.87
Offset:2
Orientation:reverse strand
Alignment:GCGGCAGGTG--
--NNCAGGTGCG
 T A C G G T A C A C T G T A C G A G T C C T G A C A T G T A C G G A C T A T C G A C G T A C G T
A C G T A C G T G C T A T A C G G A T C C G T A A T C G T A C G A C G T C T A G A G T C C T A G

ID4/MA0824.1/Jaspar

Match Rank:5
Score:0.87
Offset:2
Orientation:reverse strand
Alignment:GCGGCAGGTG--
--GACAGGTGTN
 T A C G G T A C A C T G T A C G A G T C C T G A C A T G T A C G G A C T A T C G A C G T A C G T
A C G T A C G T C T A G T C G A A G T C C G T A A T C G A T C G A G C T A C T G A G C T G T C A

SNAI2/MA0745.1/Jaspar

Match Rank:6
Score:0.86
Offset:2
Orientation:forward strand
Alignment:GCGGCAGGTG-
--AACAGGTGT
 T A C G G T A C A C T G T A C G A G T C C T G A C A T G T A C G G A C T A T C G A C G T
A C G T A C G T C T G A C T G A G T A C G C T A C T A G C T A G G A C T C A T G A G C T

E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer

Match Rank:7
Score:0.83
Offset:3
Orientation:reverse strand
Alignment:GCGGCAGGTG---
---GCAGCTGTNN
 T A C G G T A C A C T G T A C G A G T C C T G A C A T G T A C G G A C T A T C G A C G T A C G T A C G T
A C G T A C G T A C G T T C A G A G T C C G T A A T C G T A G C A C G T A C T G A G C T A C T G G C A T

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:8
Score:0.83
Offset:0
Orientation:forward strand
Alignment:GCGGCAGGTG--
NNVVCAGCTGBN
 T A C G G T A C A C T G T A C G A G T C C T G A C A T G T A C G G A C T A T C G A C G T A C G T
C T A G A G T C T A C G T A C G T G A C C G T A A C T G T A G C G C A T C A T G A T G C A G C T

Myod1/MA0499.1/Jaspar

Match Rank:9
Score:0.82
Offset:-1
Orientation:reverse strand
Alignment:-GCGGCAGGTG--
NGNGACAGCTGCN
 A C G T T A C G G T A C A C T G T A C G A G T C C T G A C A T G T A C G G A C T A T C G A C G T A C G T
T C G A T C A G A T C G T C A G T C G A A G T C C G T A A C T G T A G C C G A T A C T G A T G C C G T A

PB0003.1_Ascl2_1/Jaspar

Match Rank:10
Score:0.81
Offset:-2
Orientation:reverse strand
Alignment:--GCGGCAGGTG-----
NNNNAGCAGCTGCTGAN
 A C G T A C G T T A C G G T A C A C T G T A C G A G T C C T G A C A T G T A C G G A C T A T C G A C G T A C G T A C G T A C G T A C G T
G T A C C G T A C T A G A C G T T C G A T C A G A G T C C G T A A T C G T A G C C G A T A C T G A G T C A G C T T C A G T G C A T C A G